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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0029529 through 18771 annotations produced 1 hits


Annotation Number : CG13365
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029529
Gbrowse : chrX:514747-515241 (-) // 100.0 //
Probeset : 1640958_at
Accessions : protein= NP_569849;, nucleotide= NM_130493;
FlyMine data for FBgn0029529.
BDGP gene expression has embryonic in situ data for CG13365: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0029529 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain440 114 of 4 1.90Up
Head274 234 of 4 1.20None
Eye295 154 of 4 1.27Up
Thoracicoabdominal ganglion408 144 of 4 1.80Up
Salivary gland671 244 of 4 2.88Up
Crop282 144 of 4 1.20None
Midgut267 114 of 4 1.10None
Tubule176 74 of 4 0.80Down
Hindgut455 144 of 4 2.00Up
Heart287 74 of 4 1.23Up
Fat body166 174 of 4 0.71Down
Ovary178 54 of 4 0.80Down
Testis73 34 of 4 0.30Down
Male accessory glands215 164 of 4 0.90None
Virgin spermatheca86 44 of 4 0.37Down
Mated spermatheca83 34 of 4 0.36Down
Adult carcass300 154 of 4 1.30Up
Larval CNS271 244 of 4 1.16None
Larval Salivary gland392 84 of 4 1.68Up
Larval midgut203 144 of 4 0.87None
Larval tubule203 64 of 4 0.90None
Larval hindgut308 144 of 4 1.32Up
Larval fat body97 104 of 4 0.40Down
Larval trachea191 174 of 4 0.82None
Larval carcass282 224 of 4 1.21None
S2 cells (growing)211 104 of 4 0.91None
Whole fly233 164 of 4

Looking for FBgn0029529. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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