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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029531 through 18771 annotations produced 1 hits



(CG13362):

Annotation Number : CG13362
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029531
Gbrowse : chrX:643267-645330 (-) // 100.0 //
Probeset : 1634220_at
Accessions : protein= NP_569854;, nucleotide= NM_130498;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0029531.
BDGP gene expression has embryonic in situ data for CG13362: 17 pix of staining in 5 body parts.
BioGrid reports that CG13362 interacts with CG4711 CG4326 CG18408 CG17161 Dmel CG17162 .
VDRC has 1 RNAi stocks for FBgn0029531 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 13 of 4 0.70None
Head8 ± 11 of 4 0.70None
Eye11 ± 02 of 4 0.91None
Thoracicoabdominal ganglion11 ± 12 of 4 0.90None
Salivary gland34 ± 30 of 4 2.75Up
Crop21 ± 14 of 4 1.70Up
Midgut9 ± 12 of 4 0.70None
Tubule5 ± 10 of 4 0.40Down
Hindgut13 ± 14 of 4 1.00None
Heart9 ± 00 of 4 0.77None
Fat body8 ± 30 of 4 0.69None
Ovary8 ± 04 of 4 0.70None
Testis4 ± 11 of 4 0.30Down
Male accessory glands36 ± 44 of 4 2.90Up
Virgin spermatheca9 ± 21 of 4 0.73None
Mated spermatheca10 ± 01 of 4 0.84None
Adult carcass14 ± 21 of 4 1.20None
Larval CNS21 ± 24 of 4 1.73Up
Larval Salivary gland24 ± 23 of 4 1.92Up
Larval midgut9 ± 11 of 4 0.72None
Larval tubule9 ± 12 of 4 0.80None
Larval hindgut10 ± 02 of 4 0.81None
Larval fat body8 ± 10 of 4 0.70None
Larval trachea17 ± 24 of 4 1.37None
Larval carcass16 ± 23 of 4 1.33None
S2 cells (growing)3 ± 00 of 4 0.28Down
Whole fly12 ± 23 of 4

Looking for FBgn0029531. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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