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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029580 through 18771 annotations produced 1 hits



/// (CG14777 /// CG14778):

Annotation Number : CG14778
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029580
Gbrowse : chrX:1363850-1364593 (+) // 100.0 //
Probeset : 1641587_at
Accessions : protein= NP_001162634; /// NP_569917; /// NP_569918;, nucleotide= NM_001169163; /// NM_130561; /// NM_130562;
Pathway : 0005778 // peroxisomal membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane /
FlyMine data for FBgn0029580.
VDRC has 2 RNAi stocks for FBgn0029580 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain23 ± 14 of 4 0.50Down
Head64 ± 84 of 4 1.50None
Eye14 ± 23 of 4 0.33Down
Thoracicoabdominal ganglion30 ± 04 of 4 0.70Down
Salivary gland28 ± 23 of 4 0.66Down
Crop91 ± 64 of 4 2.10Up
Midgut13 ± 10 of 4 0.30Down
Tubule231 ± 514 of 4 5.30Up
Hindgut30 ± 14 of 4 0.70Down
Heart69 ± 54 of 4 1.59Up
Fat body30 ± 34 of 4 0.69Down
Ovary7 ± 11 of 4 0.20Down
Testis10 ± 11 of 4 0.20Down
Male accessory glands26 ± 31 of 4 0.60Down
Virgin spermatheca27 ± 14 of 4 0.63Down
Mated spermatheca29 ± 34 of 4 0.68Down
Adult carcass177 ± 134 of 4 4.10Up
Larval CNS5 ± 11 of 4 0.12Down
Larval Salivary gland8 ± 10 of 4 0.20Down
Larval midgut16 ± 21 of 4 0.37Down
Larval tubule22 ± 24 of 4 0.50Down
Larval hindgut9 ± 22 of 4 0.21Down
Larval fat body21 ± 42 of 4 0.50Down
Larval trachea8 ± 31 of 4 0.18Down
Larval carcass11 ± 20 of 4 0.26Down
S2 cells (growing)17 ± 14 of 4 0.40Down
Whole fly43 ± 14 of 4

Looking for FBgn0029580. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime