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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029588 through 18771 annotations produced 1 hits



(CG14798):

Annotation Number : CG14798
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029588
Gbrowse : chrX:1586868-1587876 (+) // 100.0 //
Probeset : 1628701_a_at
Accessions : protein= NP_569938;, nucleotide= NM_130582;
FlyMine data for FBgn0029588.
BDGP gene expression has embryonic in situ data for CG14798: 2 pix of staining in 1 body parts.
BioGrid reports that CG14798 interacts with CG15141 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain31 ± 14 of 4 1.50Up
Head11 ± 32 of 4 0.50Down
Eye16 ± 24 of 4 0.77None
Thoracicoabdominal ganglion43 ± 34 of 4 2.00Up
Salivary gland12 ± 31 of 4 0.56None
Crop8 ± 00 of 4 0.40Down
Midgut10 ± 00 of 4 0.50Down
Tubule8 ± 11 of 4 0.40Down
Hindgut7 ± 20 of 4 0.30Down
Heart8 ± 03 of 4 0.37Down
Fat body10 ± 12 of 4 0.49Down
Ovary33 ± 44 of 4 1.50None
Testis5 ± 00 of 4 0.30Down
Male accessory glands6 ± 30 of 4 0.30Down
Virgin spermatheca6 ± 01 of 4 0.28Down
Mated spermatheca6 ± 00 of 4 0.30Down
Adult carcass4 ± 10 of 4 0.20Down
Larval CNS34 ± 64 of 4 1.56Up
Larval Salivary gland6 ± 00 of 4 0.29Down
Larval midgut9 ± 10 of 4 0.44Down
Larval tubule9 ± 12 of 4 0.40Down
Larval hindgut5 ± 00 of 4 0.24Down
Larval fat body10 ± 11 of 4 0.50Down
Larval trachea6 ± 42 of 4 0.28Down
Larval carcass9 ± 10 of 4 0.42Down
S2 cells (growing)9 ± 11 of 4 0.44Down
Whole fly21 ± 24 of 4

Looking for FBgn0029588. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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