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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0029589 through 18771 annotations produced 1 hits


Annotation Number : CG14810
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029589
Gbrowse : chrX:1713575-1714130 (-) // 100.0 //
Probeset : 1640716_at
Accessions : protein= NP_569941;, nucleotide= NM_130585;
FlyMine data for FBgn0029589.
VDRC has 5 RNAi stocks for FBgn0029589 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.20Down
Head3 10 of 4 0.20Down
Eye0 00 of 4 0.06Down
Thoracicoabdominal ganglion2 00 of 4 0.10Down
Salivary gland11 40 of 4 0.69None
Crop3 10 of 4 0.20Down
Midgut4 10 of 4 0.30Down
Tubule2 00 of 4 0.10Down
Hindgut2 00 of 4 0.10Down
Heart1 00 of 4 0.07Down
Fat body5 30 of 4 0.31Down
Ovary3 00 of 4 0.20Down
Testis151 34 of 4 8.90Up
Male accessory glands3 00 of 4 0.20Down
Virgin spermatheca4 20 of 4 0.24Down
Mated spermatheca5 10 of 4 0.33Down
Adult carcass13 30 of 4 0.80None
Larval CNS3 30 of 4 0.23Down
Larval Salivary gland4 10 of 4 0.27Down
Larval midgut5 20 of 4 0.34Down
Larval tubule3 10 of 4 0.20Down
Larval hindgut3 00 of 4 0.20Down
Larval fat body41 121 of 4 2.40None
Larval trachea3 30 of 4 0.20Down
Larval carcass4 20 of 4 0.27Down
S2 cells (growing)5 00 of 4 0.33Down
Whole fly17 10 of 4

Looking for FBgn0029589. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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