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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0029594 through 18771 annotations produced 1 hits


Annotation Number : CG14806
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029594
Gbrowse : chrX:1774329-1775467 (+) // 100.0 //
Probeset : 1623373_at
Accessions : protein= NP_569956;, nucleotide= NM_130600;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0029594.
BDGP gene expression has embryonic in situ data for CG14806: 4 pix of staining in 1 body parts.
BioGrid reports that CG14806 interacts with CG4233 CG5325 .
VDRC has 3 RNAi stocks for FBgn0029594 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain576 114 of 4 1.60Up
Head425 154 of 4 1.20Up
Eye400 114 of 4 1.13None
Thoracicoabdominal ganglion681 234 of 4 1.90Up
Salivary gland541 234 of 4 1.52Up
Crop341 104 of 4 1.00None
Midgut311 104 of 4 0.90None
Tubule293 114 of 4 0.80Down
Hindgut467 224 of 4 1.30Up
Heart377 104 of 4 1.06None
Fat body334 114 of 4 0.94None
Ovary409 64 of 4 1.20Up
Testis160 74 of 4 0.50Down
Male accessory glands396 94 of 4 1.10None
Virgin spermatheca288 34 of 4 0.81Down
Mated spermatheca312 84 of 4 0.88None
Adult carcass429 154 of 4 1.20Up
Larval CNS408 354 of 4 1.15None
Larval Salivary gland441 124 of 4 1.24Up
Larval midgut297 114 of 4 0.84Down
Larval tubule290 64 of 4 0.80Down
Larval hindgut421 94 of 4 1.19Up
Larval fat body254 144 of 4 0.70Down
Larval trachea449 354 of 4 1.27Up
Larval carcass275 204 of 4 0.78Down
S2 cells (growing)210 34 of 4 0.59Down
Whole fly355 144 of 4

Looking for FBgn0029594. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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