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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029603 through 18771 annotations produced 1 hits



(CG14053):

Annotation Number : CG14053
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029603
Gbrowse : chrX:2085977-2087092 (-) // 100.0 //
Probeset : 1631869_at
Accessions : protein= NP_569986;, nucleotide= NM_130630;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008121 // ubiquinol-cytochrome-c reductase activit
FlyMine data for FBgn0029603.
BDGP gene expression has embryonic in situ data for CG14053: 4 pix of staining in 1 body parts.
BioGrid reports that CG14053 interacts with CG33017 CG33144 CG7148 CG9316 CG7399 CG9172 .
VDRC has 1 RNAi stocks for FBgn0029603 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.20Down
Head6 ± 10 of 4 0.30Down
Eye4 ± 21 of 4 0.19Down
Thoracicoabdominal ganglion6 ± 21 of 4 0.30Down
Salivary gland8 ± 40 of 4 0.34Down
Crop8 ± 00 of 4 0.30Down
Midgut7 ± 00 of 4 0.30Down
Tubule5 ± 00 of 4 0.20Down
Hindgut9 ± 01 of 4 0.40Down
Heart5 ± 00 of 4 0.21Down
Fat body15 ± 54 of 4 0.60Down
Ovary21 ± 14 of 4 0.80None
Testis313 ± 134 of 412.10Up
Male accessory glands5 ± 10 of 4 0.20Down
Virgin spermatheca9 ± 00 of 4 0.36Down
Mated spermatheca8 ± 01 of 4 0.32Down
Adult carcass14 ± 20 of 4 0.50Down
Larval CNS5 ± 11 of 4 0.22Down
Larval Salivary gland0 ± 00 of 4 0.03Down
Larval midgut5 ± 10 of 4 0.22Down
Larval tubule6 ± 31 of 4 0.20Down
Larval hindgut8 ± 11 of 4 0.34Down
Larval fat body50 ± 224 of 4 1.90None
Larval trachea4 ± 21 of 4 0.16Down
Larval carcass7 ± 10 of 4 0.28Down
S2 cells (growing)7 ± 11 of 4 0.27Down
Whole fly25 ± 14 of 4

Looking for FBgn0029603. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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