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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029606 through 18771 annotations produced 1 hits



(CG14052):

Annotation Number : CG14052
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029606
Gbrowse : chrX:2117883-2118698 (+) // 100.0 //
Probeset : 1634153_at
Accessions : protein= NP_569988;, nucleotide= NM_130632;
FlyMine data for FBgn0029606.
VDRC has 1 RNAi stocks for FBgn0029606 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 01 of 4 2.20Up
Head4 ± 10 of 4 1.20None
Eye4 ± 20 of 4 1.18None
Thoracicoabdominal ganglion4 ± 20 of 4 1.00None
Salivary gland14 ± 00 of 4 3.67Up
Crop1 ± 00 of 4 0.30None
Midgut10 ± 00 of 4 2.80Up
Tubule6 ± 10 of 4 1.60None
Hindgut8 ± 00 of 4 2.20Up
Heart1 ± 00 of 4 0.30None
Fat body10 ± 20 of 4 2.86Up
Ovary2 ± 00 of 4 0.60None
Testis3 ± 00 of 4 0.90None
Male accessory glands6 ± 10 of 4 1.70None
Virgin spermatheca10 ± 00 of 4 2.62Up
Mated spermatheca10 ± 41 of 4 2.84None
Adult carcass2 ± 00 of 4 0.70None
Larval CNS7 ± 11 of 4 1.91None
Larval Salivary gland7 ± 30 of 4 1.94None
Larval midgut18 ± 23 of 4 4.84Up
Larval tubule7 ± 01 of 4 2.00None
Larval hindgut8 ± 01 of 4 2.29Up
Larval fat body9 ± 11 of 4 2.50Up
Larval trachea7 ± 20 of 4 1.90None
Larval carcass10 ± 11 of 4 2.80Up
S2 cells (growing)6 ± 10 of 4 1.81None
Whole fly3 ± 10 of 4

Looking for FBgn0029606. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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