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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029608 through 18771 annotations produced 1 hits



(CG3091):

Annotation Number : CG3091
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029608
Gbrowse : chrX:2146364-2148163 (-) // 100.0 //
Probeset : 1639897_at
Accessions : protein= NP_001033825; /// NP_569990;, nucleotide= NM_001038736; /// NM_130634;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0008431 // vitamin E binding // inferred from
FlyMine data for FBgn0029608.
BDGP gene expression has embryonic in situ data for CG3091: 8 pix of staining in 1 body parts.
Homophila reports that CG3091 is a close match (2e-11) to human gene RLBP1 (NP_000317), a gene associated with Bothnia retinal dystrophy, 607475 (3);Fundus albipunctatus, 136880 (3);Newfoundland rod-cone dystrophy, 607476 (3);Retinitis pigmentosa, AR, 268000 (3);Retinitis punctata albescens, 136880 (3).
VDRC has 2 RNAi stocks for FBgn0029608 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain173 74 of 4 0.90None
Head529 244 of 4 2.90Up
Eye789 334 of 4 4.31Up
Thoracicoabdominal ganglion227 44 of 4 1.20Up
Salivary gland124 54 of 4 0.68Down
Crop302 194 of 4 1.70Up
Midgut1472 614 of 4 8.00Up
Tubule164 54 of 4 0.90Down
Hindgut331 84 of 4 1.80Up
Heart564 474 of 4 3.08Up
Fat body254 344 of 4 1.39Up
Ovary5 10 of 4 0.00Down
Testis40 14 of 4 0.20Down
Male accessory glands48 24 of 4 0.30Down
Virgin spermatheca291 14 of 4 1.59Up
Mated spermatheca255 174 of 4 1.39Up
Adult carcass408 194 of 4 2.20Up
Larval CNS55 104 of 4 0.30Down
Larval Salivary gland8 10 of 4 0.05Down
Larval midgut399 244 of 4 2.18Up
Larval tubule23 13 of 4 0.10Down
Larval hindgut47 44 of 4 0.26Down
Larval fat body19 13 of 4 0.10Down
Larval trachea127 334 of 4 0.69Down
Larval carcass120 34 of 4 0.66Down
S2 cells (growing)282 34 of 4 1.54Up
Whole fly183 144 of 4

Looking for FBgn0029608. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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