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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029642 through 18771 annotations produced 1 hits



(CG3592):

Annotation Number : CG3592
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029642
Gbrowse : chrX:2829202-2829952 (+) // 100.0 //
Probeset : 1635658_at
Accessions : protein= NP_570039;, nucleotide= NM_130683;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for FBgn0029642.
VDRC has 3 RNAi stocks for FBgn0029642 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.40None
Head4 10 of 4 0.70None
Eye5 10 of 4 0.94None
Thoracicoabdominal ganglion3 10 of 4 0.50None
Salivary gland4 10 of 4 0.68None
Crop4 00 of 4 0.70None
Midgut8 00 of 4 1.50None
Tubule7 00 of 4 1.20None
Hindgut5 10 of 4 0.90None
Heart2 00 of 4 0.37None
Fat body4 40 of 4 0.71None
Ovary2 10 of 4 0.40None
Testis27 04 of 4 4.70Up
Male accessory glands8 20 of 4 1.50None
Virgin spermatheca3 10 of 4 0.58None
Mated spermatheca5 10 of 4 0.98None
Adult carcass7 30 of 4 1.30None
Larval CNS3 10 of 4 0.58None
Larval Salivary gland5 10 of 4 0.91None
Larval midgut6 21 of 4 1.03None
Larval tubule6 02 of 4 1.10None
Larval hindgut2 10 of 4 0.37None
Larval fat body3 20 of 4 0.60None
Larval trachea2 20 of 4 0.34None
Larval carcass2 00 of 4 0.43None
S2 cells (growing)4 00 of 4 0.79None
Whole fly5 10 of 4

Looking for FBgn0029642. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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