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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029646 through 18771 annotations produced 1 hits



(CG14423):

Annotation Number : CG14423
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029646
Gbrowse : chrX:2839435-2840622 (+) // 100.0 //
Probeset : 1636452_at
Accessions : protein= NP_570044;, nucleotide= NM_130688;
FlyMine data for FBgn0029646.
VDRC has 1 RNAi stocks for FBgn0029646 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.60None
Head5 11 of 4 1.30None
Eye6 21 of 4 1.35None
Thoracicoabdominal ganglion6 20 of 4 1.40None
Salivary gland17 30 of 4 3.88Up
Crop4 21 of 4 1.10None
Midgut14 20 of 4 3.30Up
Tubule6 00 of 4 1.40Up
Hindgut7 10 of 4 1.70None
Heart3 10 of 4 0.88None
Fat body14 22 of 4 3.28Up
Ovary2 10 of 4 0.60None
Testis5 10 of 4 1.30None
Male accessory glands4 20 of 4 0.90None
Virgin spermatheca14 52 of 4 3.30None
Mated spermatheca8 32 of 4 1.86None
Adult carcass11 23 of 4 2.60None
Larval CNS5 21 of 4 1.29None
Larval Salivary gland7 20 of 4 1.60None
Larval midgut11 23 of 4 2.51Up
Larval tubule4 10 of 4 0.90None
Larval hindgut6 01 of 4 1.42None
Larval fat body15 32 of 4 3.50Up
Larval trachea3 20 of 4 0.72None
Larval carcass10 11 of 4 2.30None
S2 cells (growing)4 11 of 4 1.08None
Whole fly4 10 of 4

Looking for FBgn0029646. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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