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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029647 through 18771 annotations produced 1 hits



(CG17959):

Annotation Number : CG17959
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029647
Gbrowse : chrX:2841137-2841584 (+) // 100.0 //
Probeset : 1631052_at
Accessions : protein= NP_570045;, nucleotide= NM_130689;
FlyMine data for FBgn0029647.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 3.30None
Head2 ± 10 of 4 2.80None
Eye1 ± 00 of 4 1.97None
Thoracicoabdominal ganglion3 ± 10 of 4 4.40None
Salivary gland5 ± 20 of 4 6.81None
Crop2 ± 10 of 4 3.30None
Midgut0 ± 00 of 4 1.00None
Tubule4 ± 00 of 4 6.00Up
Hindgut4 ± 10 of 4 5.30None
Heart1 ± 00 of 4 1.41None
Fat body1 ± 10 of 4 1.72None
Ovary1 ± 00 of 4 1.90None
Testis3 ± 10 of 4 3.90None
Male accessory glands4 ± 10 of 4 5.00None
Virgin spermatheca1 ± 00 of 4 1.25None
Mated spermatheca3 ± 20 of 4 4.59None
Adult carcass4 ± 20 of 4 6.00None
Larval CNS0 ± 00 of 4 0.69None
Larval Salivary gland1 ± 00 of 4 1.91None
Larval midgut0 ± 00 of 4 1.03None
Larval tubule0 ± 00 of 4 1.00None
Larval hindgut0 ± 00 of 4 0.84None
Larval fat body2 ± 10 of 4 3.00None
Larval trachea3 ± 40 of 4 4.66None
Larval carcass0 ± 00 of 4 1.12None
S2 cells (growing)0 ± 00 of 4 1.09None
Whole fly0 ± 00 of 4

Looking for FBgn0029647. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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