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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029657 through 18771 annotations produced 2 hits



(CG12535):

Annotation Number : CG12535
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029657
Gbrowse : chrX:3286661-3287447 (-) // 100.0 //
Probeset : 1630001_at
Accessions : protein= NP_726860;, nucleotide= NM_166972;
FlyMine data for FBgn0029657.
VDRC has 3 RNAi stocks for FBgn0029657 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.10Down
Head5 10 of 4 0.30Down
Eye1 00 of 4 0.08Down
Thoracicoabdominal ganglion3 20 of 4 0.10Down
Salivary gland4 10 of 4 0.20Down
Crop2 10 of 4 0.10Down
Midgut1 00 of 4 0.10Down
Tubule1 00 of 4 0.10Down
Hindgut1 00 of 4 0.10Down
Heart0 00 of 4 0.04Down
Fat body6 50 of 4 0.32Down
Ovary0 00 of 4 0.00Down
Testis328 214 of 415.60Up
Male accessory glands11 31 of 4 0.60None
Virgin spermatheca2 00 of 4 0.11Down
Mated spermatheca2 10 of 4 0.11Down
Adult carcass10 51 of 4 0.50None
Larval CNS4 30 of 4 0.19Down
Larval Salivary gland3 10 of 4 0.16Down
Larval midgut1 00 of 4 0.06Down
Larval tubule0 00 of 4 0.00Down
Larval hindgut1 10 of 4 0.09Down
Larval fat body51 262 of 4 2.40None
Larval trachea2 10 of 4 0.13Down
Larval carcass2 10 of 4 0.14Down
S2 cells (growing)52 44 of 4 2.51Up
Whole fly21 14 of 4



(CG12535):

Annotation Number : CG12535
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029657
Gbrowse : chrX:3286661-3287447 (-) // 100.0 //
Probeset : 1635794_a_at
Accessions : protein= NP_726860;, nucleotide= NM_166972;
FlyMine data for FBgn0029657.
VDRC has 3 RNAi stocks for FBgn0029657 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head12 21 of 4 0.40Down
Eye2 00 of 4 0.07Down
Thoracicoabdominal ganglion1 10 of 4 0.10Down
Salivary gland2 00 of 4 0.08Down
Crop4 10 of 4 0.10Down
Midgut8 20 of 4 0.30Down
Tubule3 00 of 4 0.10Down
Hindgut5 20 of 4 0.20Down
Heart2 10 of 4 0.10Down
Fat body5 30 of 4 0.19Down
Ovary1 00 of 4 0.00Down
Testis366 204 of 412.70Up
Male accessory glands13 30 of 4 0.50Down
Virgin spermatheca4 10 of 4 0.17Down
Mated spermatheca4 20 of 4 0.14Down
Adult carcass18 71 of 4 0.60None
Larval CNS5 10 of 4 0.18Down
Larval Salivary gland3 00 of 4 0.12Down
Larval midgut3 00 of 4 0.11Down
Larval tubule1 00 of 4 0.10Down
Larval hindgut3 10 of 4 0.12Down
Larval fat body43 201 of 4 1.50None
Larval trachea3 30 of 4 0.12Down
Larval carcass1 00 of 4 0.06Down
S2 cells (growing)83 24 of 4 2.89Up
Whole fly28 14 of 4

Looking for FBgn0029657. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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