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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029658 through 18771 annotations produced 1 hits



(CG14269):

Annotation Number : CG14269
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029658
Gbrowse : chrX:3329120-3329800 (-) // 100.0 //
Probeset : 1636368_at
Accessions : protein= NP_570056;, nucleotide= NM_130700;
FlyMine data for FBgn0029658.
VDRC has 3 RNAi stocks for FBgn0029658 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 11 of 4 0.10Down
Head3 00 of 4 0.10Down
Eye0 00 of 4 0.01Down
Thoracicoabdominal ganglion4 00 of 4 0.10Down
Salivary gland12 20 of 4 0.22Down
Crop8 04 of 4 0.20Down
Midgut7 00 of 4 0.10Down
Tubule8 01 of 4 0.10Down
Hindgut4 00 of 4 0.10Down
Heart4 10 of 4 0.08Down
Fat body5 30 of 4 0.10Down
Ovary2 00 of 4 0.00Down
Testis582 184 of 410.30Up
Male accessory glands4 10 of 4 0.10Down
Virgin spermatheca6 11 of 4 0.12Down
Mated spermatheca10 32 of 4 0.19Down
Adult carcass8 21 of 4 0.10Down
Larval CNS3 10 of 4 0.06Down
Larval Salivary gland4 20 of 4 0.08Down
Larval midgut4 10 of 4 0.08Down
Larval tubule4 10 of 4 0.10Down
Larval hindgut5 10 of 4 0.09Down
Larval fat body38 192 of 4 0.70None
Larval trachea3 31 of 4 0.06Down
Larval carcass3 10 of 4 0.05Down
S2 cells (growing)6 13 of 4 0.12Down
Whole fly56 14 of 4

Looking for FBgn0029658. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime