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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029663 through 18771 annotations produced 1 hits



(CG10804):

Annotation Number : CG10804
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029663
Gbrowse : chrX:3370721-3376355 (-) // 99.69 //
Probeset : 1632629_a_at
Accessions : protein= NP_001138150; /// NP_570061; /// NP_726868;, nucleotide= NM_001144678; /// NM_130705; /// NM_166975;
Pathway : 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from e
Interpro : 0005326 // neurotransmitter transporter activity // inferred from sequence or structural similarity /// 0005328 // neuro
FlyMine data for FBgn0029663.
BDGP gene expression has embryonic in situ data for CG10804: 7 pix of staining in 3 body parts.
Homophila reports that CG10804 is a close match (3e-88) to human gene SLC6A8;CRTR (NP_005620), a gene associated with Creatine deficiency syndrome, X-linked, 300352 (3).
TRiP has 1 RNAi stocks for FBgn0029663 available for purchase.
VDRC has 3 RNAi stocks for FBgn0029663 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain617 174 of 436.90Up
Head119 114 of 4 7.20Up
Eye44 44 of 4 2.64Up
Thoracicoabdominal ganglion625 154 of 437.40Up
Salivary gland15 21 of 4 0.94None
Crop9 13 of 4 0.60None
Midgut3 00 of 4 0.20Down
Tubule9 12 of 4 0.60Down
Hindgut7 13 of 4 0.40Down
Heart4 11 of 4 0.26Down
Fat body21 54 of 4 1.27None
Ovary1 00 of 4 0.10Down
Testis1 11 of 4 0.10Down
Male accessory glands6 00 of 4 0.40Down
Virgin spermatheca19 24 of 4 1.18None
Mated spermatheca31 74 of 4 1.87None
Adult carcass12 20 of 4 0.80None
Larval CNS154 174 of 4 9.25Up
Larval Salivary gland5 11 of 4 0.30Down
Larval midgut4 01 of 4 0.24Down
Larval tubule6 11 of 4 0.40Down
Larval hindgut6 13 of 4 0.36Down
Larval fat body3 00 of 4 0.20Down
Larval trachea3 22 of 4 0.22Down
Larval carcass2 10 of 4 0.16Down
S2 cells (growing)5 12 of 4 0.34Down
Whole fly16 34 of 4

Looking for FBgn0029663. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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