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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029664 through 18771 annotations produced 1 hits



(CG10802):

Annotation Number : CG10802
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029664
Gbrowse : chrX:3377001-3378593 (+) // 100.0 //
Probeset : 1633355_at
Accessions : protein= NP_570062;, nucleotide= NM_130706;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fr
FlyMine data for FBgn0029664.
BDGP gene expression has embryonic in situ data for CG10802: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0029664 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain95 14 of 4 1.30Up
Head68 104 of 4 1.00None
Eye164 154 of 4 2.34Up
Thoracicoabdominal ganglion122 24 of 4 1.70Up
Salivary gland114 14 of 4 1.63Up
Crop70 54 of 4 1.00None
Midgut49 54 of 4 0.70Down
Tubule103 104 of 4 1.50Up
Hindgut58 44 of 4 0.80None
Heart55 34 of 4 0.78Down
Fat body58 63 of 4 0.83Down
Ovary77 34 of 4 1.10None
Testis20 04 of 4 0.30Down
Male accessory glands94 74 of 4 1.30Up
Virgin spermatheca60 24 of 4 0.86None
Mated spermatheca42 54 of 4 0.60Down
Adult carcass142 74 of 4 2.00Up
Larval CNS79 84 of 4 1.13None
Larval Salivary gland70 64 of 4 1.00None
Larval midgut49 34 of 4 0.69Down
Larval tubule84 54 of 4 1.20None
Larval hindgut73 64 of 4 1.05None
Larval fat body51 34 of 4 0.70Down
Larval trachea57 104 of 4 0.81None
Larval carcass64 84 of 4 0.91None
S2 cells (growing)98 14 of 4 1.39Up
Whole fly70 34 of 4

Looking for FBgn0029664. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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