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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029679 through 18771 annotations produced 1 hits



/// (CG2901 /// CG7755):

Annotation Number : CG2901
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029679
Gbrowse : chrX:3722334-3724913 (+) // 100.0 //
Probeset : 1635170_at
Accessions : protein= NP_570077;, nucleotide= NM_130721;
Pathway : 0005759 // mitochondrial matrix // inferred from sequence similarity /// 0016021 // integral to membrane // inferred fro
Interpro : "0000287 // magnesium ion binding // inferred from electronic annotation /// 0004449 // isocitrate dehydrogenase (NAD+)
FlyMine data for FBgn0029679.
VDRC has 2 RNAi stocks for FBgn0029679 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.40None
Head4 00 of 4 1.20None
Eye1 00 of 4 0.50None
Thoracicoabdominal ganglion1 00 of 4 0.30Down
Salivary gland5 10 of 4 1.46None
Crop2 00 of 4 0.70None
Midgut4 21 of 4 1.10None
Tubule2 00 of 4 0.70None
Hindgut2 10 of 4 0.70None
Heart0 00 of 4 0.13Down
Fat body2 11 of 4 0.74None
Ovary3 10 of 4 0.80None
Testis58 34 of 415.60Up
Male accessory glands6 20 of 4 1.60None
Virgin spermatheca2 10 of 4 0.60None
Mated spermatheca3 00 of 4 0.85None
Adult carcass7 31 of 4 2.10None
Larval CNS3 21 of 4 0.85None
Larval Salivary gland6 00 of 4 1.60Up
Larval midgut3 11 of 4 0.91None
Larval tubule4 00 of 4 1.10None
Larval hindgut3 00 of 4 0.95None
Larval fat body13 52 of 4 3.50None
Larval trachea2 10 of 4 0.69None
Larval carcass7 11 of 4 1.93None
S2 cells (growing)3 12 of 4 0.83None
Whole fly3 03 of 4

Looking for FBgn0029679. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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