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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029686 through 18771 annotations produced 2 hits



/// /// (CG2941 /// CG32783 /// CG32786):

Annotation Number : CG2941
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029686 /// FBgn0052783 /// FBgn0052786
Gbrowse : chrX:3830552-3834039 (+) // 100.0 // /// chrX:3834700-3838298 (+) // 95.23 // /// chrX:3838896-3842493 (+) // 94.19 //
Probeset : 1628362_s_at
Accessions : protein= NP_570086; /// NP_726900; /// NP_726901;, nucleotide= NM_130730; /// NM_166997; /// NM_166998;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0029686 /// FBgn0052783 /// FBgn0052786.
BioGrid reports that CG2941 interacts with CG8366 CG5680 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain31 34 of 4 0.60Down
Head15 13 of 4 0.30Down
Eye15 24 of 4 0.27Down
Thoracicoabdominal ganglion43 24 of 4 0.80Down
Salivary gland20 51 of 4 0.35Down
Crop19 24 of 4 0.30Down
Midgut22 14 of 4 0.40Down
Tubule14 41 of 4 0.30Down
Hindgut19 22 of 4 0.30Down
Heart16 24 of 4 0.28Down
Fat body19 13 of 4 0.33Down
Ovary135 14 of 4 2.40Up
Testis211 104 of 4 3.70Up
Male accessory glands18 23 of 4 0.30Down
Virgin spermatheca21 14 of 4 0.38Down
Mated spermatheca22 24 of 4 0.39Down
Adult carcass8 20 of 4 0.20Down
Larval CNS76 34 of 4 1.34Up
Larval Salivary gland28 14 of 4 0.50Down
Larval midgut29 03 of 4 0.52Down
Larval tubule20 14 of 4 0.40Down
Larval hindgut30 14 of 4 0.54Down
Larval fat body51 103 of 4 0.90None
Larval trachea37 34 of 4 0.65Down
Larval carcass17 21 of 4 0.30Down
S2 cells (growing)42 24 of 4 0.74Down
Whole fly57 14 of 4



(CG2941):

Annotation Number : CG2941
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029686
Gbrowse : chrX:3830552-3834039 (+) // 100.0 // /// chrX:3834700-3838298 (+) // 95.23 // /// chrX:3838896-3842493 (+) // 94.19 //
Probeset : 1636371_at
Accessions : protein= NP_570086;, nucleotide= NM_130730;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0029686.
BDGP gene expression has embryonic in situ data for CG2941: 20 pix of staining in 21 body parts.
BioGrid reports that CG2941 interacts with CG8366 CG5680 .
TRiP has 2 RNAi stocks for FBgn0029686 available for purchase.
VDRC has 2 RNAi stocks for FBgn0029686 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain51 64 of 4 0.80None
Head28 24 of 4 0.50Down
Eye7 03 of 4 0.12Down
Thoracicoabdominal ganglion50 64 of 4 0.80None
Salivary gland22 14 of 4 0.36Down
Crop35 44 of 4 0.60None
Midgut33 14 of 4 0.50Down
Tubule14 23 of 4 0.20Down
Hindgut26 34 of 4 0.40Down
Heart17 04 of 4 0.29Down
Fat body58 94 of 4 0.95None
Ovary338 44 of 4 5.50Up
Testis19 24 of 4 0.30Down
Male accessory glands21 24 of 4 0.40Down
Virgin spermatheca34 24 of 4 0.56None
Mated spermatheca38 54 of 4 0.62None
Adult carcass22 34 of 4 0.40Down
Larval CNS167 234 of 4 2.72Up
Larval Salivary gland38 74 of 4 0.63None
Larval midgut47 54 of 4 0.77None
Larval tubule30 44 of 4 0.50Down
Larval hindgut67 24 of 4 1.09None
Larval fat body56 34 of 4 0.90None
Larval trachea25 14 of 4 0.42Down
Larval carcass41 54 of 4 0.67None
S2 cells (growing)63 34 of 4 1.03None
Whole fly61 94 of 4

Looking for FBgn0029686. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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