FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0029687 through 18771 annotations produced 1 hits

Vap-33-1 (Vap-33-1):

Annotation Number : CG5014
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029687
Gbrowse : chrX:3843008-3848134 (+) // 99.84 //
Probeset : 1631868_at
Accessions : protein= NP_570087; /// NP_996346; /// NP_996347; /// NP_996348;, nucleotide= NM_130731; /// NM_206623; /// NM_206624; /// NM_206625;
Pathway : 0005811 // lipid particle // inferred from direct assay /// 0008021 // synaptic vesicle // non-traceable author statemen
Interpro : 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferre
FlyMine data for FBgn0029687.
Homophila reports that CG5014 is a close match (5e-25) to human gene ALS8;VAPB;VAPC (NP_004729), a gene associated with Amyotrophic lateral sclerosis 8, 608627 (3);Spinal muscular atrophy, late-onset, Finkel type, 182980 (3).
BioGrid reports that CG5014 interacts with CG9128 .
TRiP has 1 RNAi stocks for FBgn0029687 available for purchase.
VDRC has 3 RNAi stocks for FBgn0029687 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	746 ± 71	4 of 4	1.40	Up
Head	410 ± 5	4 of 4	0.70	Down
Eye	508 ± 22	4 of 4	0.93	None
Thoracicoabdominal ganglion	662 ± 48	4 of 4	1.20	None
Salivary gland	248 ± 20	4 of 4	0.45	Down
Crop	640 ± 22	4 of 4	1.20	None
Midgut	389 ± 25	4 of 4	0.70	Down
Tubule	445 ± 25	4 of 4	0.80	Down
Hindgut	511 ± 50	4 of 4	0.90	None
Heart	506 ± 38	4 of 4	0.92	None
Fat body	692 ± 81	4 of 4	1.26	Up
Ovary	954 ± 28	4 of 4	1.70	Up
Testis	135 ± 13	4 of 4	0.20	Down
Male accessory glands	732 ± 67	4 of 4	1.30	None
Virgin spermatheca	521 ± 33	4 of 4	0.95	None
Mated spermatheca	496 ± 7	4 of 4	0.91	None
Adult carcass	386 ± 47	4 of 4	0.70	Down
Larval CNS	1116 ± 134	4 of 4	2.04	Up
Larval Salivary gland	789 ± 48	4 of 4	1.44	Up
Larval midgut	1054 ± 50	4 of 4	1.92	Up
Larval tubule	680 ± 50	4 of 4	1.20	None
Larval hindgut	1040 ± 31	4 of 4	1.90	Up
Larval fat body	607 ± 33	4 of 4	1.10	None
Larval trachea	633 ± 48	4 of 4	1.16	None
Larval carcass	976 ± 75	4 of 4	1.78	Up
S2 cells (growing)	425 ± 20	4 of 4	0.78	Down
Whole fly	548 ± 31	4 of 4

Looking for FBgn0029687. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720