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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029687 through 18771 annotations produced 1 hits



Vap-33-1 (Vap-33-1):

Annotation Number : CG5014
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029687
Gbrowse : chrX:3843008-3848134 (+) // 99.84 //
Probeset : 1631868_at
Accessions : protein= NP_570087; /// NP_996346; /// NP_996347; /// NP_996348;, nucleotide= NM_130731; /// NM_206623; /// NM_206624; /// NM_206625;
Pathway : 0005811 // lipid particle // inferred from direct assay /// 0008021 // synaptic vesicle // non-traceable author statemen
Interpro : 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferre
FlyMine data for FBgn0029687.
Homophila reports that CG5014 is a close match (5e-25) to human gene ALS8;VAPB;VAPC (NP_004729), a gene associated with Amyotrophic lateral sclerosis 8, 608627 (3);Spinal muscular atrophy, late-onset, Finkel type, 182980 (3).
BioGrid reports that CG5014 interacts with CG9128 .
TRiP has 1 RNAi stocks for FBgn0029687 available for purchase.
VDRC has 3 RNAi stocks for FBgn0029687 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain746 714 of 4 1.40Up
Head410 54 of 4 0.70Down
Eye508 224 of 4 0.93None
Thoracicoabdominal ganglion662 484 of 4 1.20None
Salivary gland248 204 of 4 0.45Down
Crop640 224 of 4 1.20None
Midgut389 254 of 4 0.70Down
Tubule445 254 of 4 0.80Down
Hindgut511 504 of 4 0.90None
Heart506 384 of 4 0.92None
Fat body692 814 of 4 1.26Up
Ovary954 284 of 4 1.70Up
Testis135 134 of 4 0.20Down
Male accessory glands732 674 of 4 1.30None
Virgin spermatheca521 334 of 4 0.95None
Mated spermatheca496 74 of 4 0.91None
Adult carcass386 474 of 4 0.70Down
Larval CNS1116 1344 of 4 2.04Up
Larval Salivary gland789 484 of 4 1.44Up
Larval midgut1054 504 of 4 1.92Up
Larval tubule680 504 of 4 1.20None
Larval hindgut1040 314 of 4 1.90Up
Larval fat body607 334 of 4 1.10None
Larval trachea633 484 of 4 1.16None
Larval carcass976 754 of 4 1.78Up
S2 cells (growing)425 204 of 4 0.78Down
Whole fly548 314 of 4

Looking for FBgn0029687. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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