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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029688 through 18771 annotations produced 1 hits



Lava Lamp (lva):

Annotation Number : CG6450
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029688
Gbrowse : chrX:3849907-3858787 (-) // 100.0 //
Probeset : 1635954_at
Accessions : protein= NP_525064;, nucleotide= NM_080325;
Pathway : 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // non-traceable author statemen
Interpro : 0003779 // actin binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interact
FlyMine data for FBgn0029688.
BioGrid reports that CG6450 interacts with CG7793 CG9480 Dmel CR31838 .
VDRC has 2 RNAi stocks for FBgn0029688 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain119 94 of 4 1.60Up
Head97 64 of 4 1.30Up
Eye113 34 of 4 1.53Up
Thoracicoabdominal ganglion112 44 of 4 1.50Up
Salivary gland559 304 of 4 7.58Up
Crop125 74 of 4 1.70Up
Midgut70 24 of 4 0.90None
Tubule80 14 of 4 1.10Up
Hindgut69 54 of 4 0.90None
Heart74 14 of 4 1.01None
Fat body80 164 of 4 1.09None
Ovary96 34 of 4 1.30Up
Testis37 14 of 4 0.50Down
Male accessory glands424 274 of 4 5.70Up
Virgin spermatheca82 134 of 4 1.12None
Mated spermatheca106 144 of 4 1.44None
Adult carcass85 64 of 4 1.20None
Larval CNS72 24 of 4 0.98None
Larval Salivary gland520 234 of 4 7.04Up
Larval midgut81 24 of 4 1.11None
Larval tubule108 54 of 4 1.50Up
Larval hindgut105 24 of 4 1.43Up
Larval fat body80 24 of 4 1.10None
Larval trachea90 74 of 4 1.22None
Larval carcass72 44 of 4 0.98None
S2 cells (growing)118 64 of 4 1.61Up
Whole fly73 54 of 4

Looking for FBgn0029688. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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