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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029690 through 18771 annotations produced 1 hits



(CG6414):

Annotation Number : CG6414
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029690
Gbrowse : chrX:3863030-3865381 (-) // 100.0 //
Probeset : 1639042_at
Accessions : protein= NP_570089;, nucleotide= NM_130733;
Interpro : 0004091 // carboxylesterase activity // inferred from sequence or structural similarity /// 0004091 // carboxylesterase
FlyMine data for FBgn0029690.
Homophila reports that CG6414 is a close match (9e-28) to human gene AITD3;TG (NP_003226), a gene associated with Goiter, adolescent multinodular (1);Goiter, nonendemic, simple (3);Hypothyroidism, hereditary congenital (3);{Autoimmune thyroid disease, susceptibility to 3}, 608175 (3).
VDRC has 1 RNAi stocks for FBgn0029690 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 12 of 4 1.40None
Head4 00 of 4 0.80None
Eye6 11 of 4 1.20None
Thoracicoabdominal ganglion8 11 of 4 1.60None
Salivary gland5 20 of 4 1.00None
Crop9 31 of 4 1.70None
Midgut9 30 of 4 1.80None
Tubule5 10 of 4 1.00None
Hindgut5 12 of 4 1.00None
Heart4 01 of 4 0.84None
Fat body14 83 of 4 2.60None
Ovary4 10 of 4 0.80None
Testis5 11 of 4 0.90None
Male accessory glands5 00 of 4 1.10None
Virgin spermatheca6 01 of 4 1.15None
Mated spermatheca5 10 of 4 1.09None
Adult carcass5 30 of 4 1.00None
Larval CNS7 21 of 4 1.33None
Larval Salivary gland15 52 of 4 2.93None
Larval midgut16 23 of 4 3.01Up
Larval tubule6 20 of 4 1.20None
Larval hindgut12 04 of 4 2.24Up
Larval fat body6 20 of 4 1.20None
Larval trachea7 20 of 4 1.39None
Larval carcass224 244 of 441.40Up
S2 cells (growing)5 10 of 4 1.07None
Whole fly5 11 of 4

Looking for FBgn0029690. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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