FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0029693 through 18771 annotations produced 1 hits

(CG6379):

Annotation Number : CG6379
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029693
Gbrowse : chrX:3991947-3995068 (-) // 100.0 //
Probeset : 1639536_at
Accessions : protein= NP_572148;, nucleotide= NM_131920;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004483 // mRNA (nucleoside-2'-O-)-methyltran
FlyMine data for FBgn0029693.
VDRC has 3 RNAi stocks for FBgn0029693 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	123 ± 3	4 of 4	2.10	Up
Head	65 ± 2	4 of 4	1.10	None
Eye	74 ± 2	4 of 4	1.26	Up
Thoracicoabdominal ganglion	111 ± 8	4 of 4	1.90	Up
Salivary gland	114 ± 1	4 of 4	1.93	Up
Crop	56 ± 2	4 of 4	1.00	None
Midgut	42 ± 1	4 of 4	0.70	Down
Tubule	57 ± 1	4 of 4	1.00	None
Hindgut	55 ± 2	4 of 4	0.90	None
Heart	46 ± 0	4 of 4	0.78	Down
Fat body	39 ± 5	4 of 4	0.67	Down
Ovary	111 ± 6	4 of 4	1.90	Up
Testis	42 ± 2	4 of 4	0.70	Down
Male accessory glands	87 ± 3	4 of 4	1.50	Up
Virgin spermatheca	20 ± 1	4 of 4	0.34	Down
Mated spermatheca	34 ± 2	4 of 4	0.58	Down
Adult carcass	52 ± 7	4 of 4	0.90	None
Larval CNS	209 ± 10	4 of 4	3.55	Up
Larval Salivary gland	71 ± 3	4 of 4	1.21	Up
Larval midgut	59 ± 2	4 of 4	1.00	None
Larval tubule	64 ± 2	4 of 4	1.10	None
Larval hindgut	62 ± 2	4 of 4	1.06	None
Larval fat body	34 ± 5	4 of 4	0.60	Down
Larval trachea	62 ± 9	4 of 4	1.06	None
Larval carcass	48 ± 2	4 of 4	0.83	Down
S2 cells (growing)	126 ± 2	4 of 4	2.14	Up
Whole fly	59 ± 3	4 of 4

Looking for FBgn0029693. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720