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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0029696 through 18771 annotations produced 1 hits


Annotation Number : CG15571
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029696
Gbrowse : chrX:4110927-4111386 (-) // 100.0 //
Probeset : 1631343_at
Accessions : protein= NP_572153;, nucleotide= NM_131925;
FlyMine data for FBgn0029696.
VDRC has 2 RNAi stocks for FBgn0029696 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head2 10 of 4 0.00Down
Eye0 00 of 4 0.01Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland2 10 of 4 0.03Down
Crop2 10 of 4 0.00Down
Midgut2 10 of 4 0.00Down
Tubule2 00 of 4 0.00Down
Hindgut1 00 of 4 0.00Down
Heart2 00 of 4 0.03Down
Fat body4 00 of 4 0.05Down
Ovary302 294 of 4 3.90Up
Testis1 00 of 4 0.00Down
Male accessory glands2 20 of 4 0.00Down
Virgin spermatheca0 00 of 4 0.01Down
Mated spermatheca1 00 of 4 0.02Down
Adult carcass7 20 of 4 0.10Down
Larval CNS2 21 of 4 0.03Down
Larval Salivary gland3 10 of 4 0.04Down
Larval midgut5 20 of 4 0.06Down
Larval tubule0 00 of 4 0.00Down
Larval hindgut1 00 of 4 0.01Down
Larval fat body3 10 of 4 0.00Down
Larval trachea2 10 of 4 0.03Down
Larval carcass3 10 of 4 0.05Down
S2 cells (growing)3 00 of 4 0.04Down
Whole fly78 124 of 4

Looking for FBgn0029696. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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