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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029697 through 18771 annotations produced 1 hits



(CG15570):

Annotation Number : CG15570
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029697
Gbrowse : chrX:4112258-4117216 (+) // 100.0 //
Probeset : 1634154_at
Accessions : protein= NP_572154;, nucleotide= NM_131926;
Pathway : 0042600 // chorion // inferred from direct assay
FlyMine data for FBgn0029697.
VDRC has 3 RNAi stocks for FBgn0029697 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head4 10 of 4 0.00Down
Eye0 00 of 4 0.01Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland13 30 of 4 0.15Down
Crop1 00 of 4 0.00Down
Midgut2 00 of 4 0.00Down
Tubule2 00 of 4 0.00Down
Hindgut1 00 of 4 0.00Down
Heart4 00 of 4 0.04Down
Fat body12 40 of 4 0.14Down
Ovary245 314 of 4 2.70Up
Testis13 14 of 4 0.10Down
Male accessory glands2 10 of 4 0.00Down
Virgin spermatheca8 10 of 4 0.09Down
Mated spermatheca9 11 of 4 0.10Down
Adult carcass8 20 of 4 0.10Down
Larval CNS1 10 of 4 0.02Down
Larval Salivary gland5 30 of 4 0.05Down
Larval midgut4 10 of 4 0.05Down
Larval tubule2 10 of 4 0.00Down
Larval hindgut2 10 of 4 0.03Down
Larval fat body4 20 of 4 0.10Down
Larval trachea3 20 of 4 0.04Down
Larval carcass5 10 of 4 0.06Down
S2 cells (growing)2 00 of 4 0.03Down
Whole fly91 204 of 4

Looking for FBgn0029697. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime