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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029700 through 18771 annotations produced 1 hits



(CG15576):

Annotation Number : CG15576
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029700
Gbrowse : chrX:4145907-4146730 (-) // 100.0 //
Probeset : 1638640_at
Accessions : protein= NP_572156;, nucleotide= NM_131928;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0029700.
BioGrid reports that CG15576 interacts with CG5780 CG8508 CG17498 CG2184 CG32446 CG6464 CG6510 CG6779 .
VDRC has 4 RNAi stocks for FBgn0029700 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 01 of 4 0.00Down
Head7 ± 21 of 4 0.10Down
Eye5 ± 10 of 4 0.05Down
Thoracicoabdominal ganglion7 ± 10 of 4 0.10Down
Salivary gland16 ± 10 of 4 0.17Down
Crop11 ± 01 of 4 0.10Down
Midgut3 ± 00 of 4 0.00Down
Tubule9 ± 10 of 4 0.10Down
Hindgut9 ± 20 of 4 0.10Down
Heart6 ± 11 of 4 0.07Down
Fat body10 ± 30 of 4 0.10Down
Ovary4 ± 00 of 4 0.00Down
Testis1021 ± 204 of 410.40Up
Male accessory glands12 ± 10 of 4 0.10Down
Virgin spermatheca3 ± 10 of 4 0.04Down
Mated spermatheca5 ± 10 of 4 0.05Down
Adult carcass16 ± 22 of 4 0.20Down
Larval CNS4 ± 30 of 4 0.04Down
Larval Salivary gland9 ± 10 of 4 0.10Down
Larval midgut11 ± 11 of 4 0.12Down
Larval tubule7 ± 10 of 4 0.10Down
Larval hindgut9 ± 10 of 4 0.10Down
Larval fat body131 ± 644 of 4 1.30None
Larval trachea6 ± 71 of 4 0.06Down
Larval carcass24 ± 34 of 4 0.25Down
S2 cells (growing)5 ± 00 of 4 0.05Down
Whole fly98 ± 74 of 4

Looking for FBgn0029700. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime