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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029706 through 18771 annotations produced 1 hits



chrX:4260451-4265169 (+) // 100.0 // ():

Annotation Number : CG3626
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1633964_at
Accessions : protein= , nucleotide= NP_572162;
Pathway : 0006546 // glycine catabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferr
Interpro : 0005737 // cytoplasm // inferred from electronic annotation /// 0019910 // mitochondrial pyruvate dehydrogenase (lipoami
FlyMine data for full length.
Homophila reports that CG3626 is a close match (1e-85) to human gene DMGDH;DMGDHD (NP_037523), a gene associated with Dimethylglycine dehydrogenase deficiency, 605850 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain158 54 of 4 1.10None
Head195 154 of 4 1.30Up
Eye75 24 of 4 0.52Down
Thoracicoabdominal ganglion152 14 of 4 1.00None
Salivary gland184 124 of 4 1.25None
Crop289 184 of 4 2.00Up
Midgut106 14 of 4 0.70Down
Tubule212 24 of 4 1.50Up
Hindgut189 144 of 4 1.30None
Heart158 174 of 4 1.08None
Fat body393 214 of 4 2.68Up
Ovary243 64 of 4 1.70Up
Testis16 14 of 4 0.10Down
Male accessory glands168 44 of 4 1.10None
Virgin spermatheca183 194 of 4 1.25None
Mated spermatheca162 84 of 4 1.11None
Adult carcass244 164 of 4 1.70Up
Larval CNS257 344 of 4 1.76Up
Larval Salivary gland232 144 of 4 1.58Up
Larval midgut139 54 of 4 0.95None
Larval tubule194 24 of 4 1.30Up
Larval hindgut361 104 of 4 2.46Up
Larval fat body254 264 of 4 1.70Up
Larval trachea130 84 of 4 0.89None
Larval carcass513 324 of 4 3.50Up
S2 cells (growing)229 84 of 4 1.56Up
Whole fly146 94 of 4

Looking for FBgn0029706. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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