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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029707 through 18771 annotations produced 1 hits



(CG12688):

Annotation Number : CG12688
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029707
Gbrowse : chrX:4275504-4277202 (+) // 100.0 //
Probeset : 1638916_at
Accessions : protein= NP_572163;, nucleotide= NM_131935;
FlyMine data for FBgn0029707.
VDRC has 3 RNAi stocks for FBgn0029707 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 10 of 4 1.40None
Head3 ± 10 of 4 0.70None
Eye1 ± 00 of 4 0.26None
Thoracicoabdominal ganglion3 ± 10 of 4 0.60None
Salivary gland10 ± 50 of 4 2.03None
Crop1 ± 00 of 4 0.30None
Midgut7 ± 10 of 4 1.40None
Tubule4 ± 00 of 4 0.80None
Hindgut4 ± 10 of 4 0.90None
Heart6 ± 21 of 4 1.21None
Fat body3 ± 30 of 4 0.71None
Ovary4 ± 00 of 4 0.70None
Testis2 ± 10 of 4 0.40None
Male accessory glands26 ± 31 of 4 4.90Up
Virgin spermatheca7 ± 10 of 4 1.44None
Mated spermatheca6 ± 20 of 4 1.24None
Adult carcass13 ± 10 of 4 2.50Up
Larval CNS3 ± 20 of 4 0.64None
Larval Salivary gland5 ± 20 of 4 0.93None
Larval midgut10 ± 10 of 4 1.88Up
Larval tubule2 ± 10 of 4 0.50None
Larval hindgut4 ± 10 of 4 0.73None
Larval fat body4 ± 20 of 4 0.80None
Larval trachea4 ± 30 of 4 0.80None
Larval carcass7 ± 10 of 4 1.41None
S2 cells (growing)3 ± 00 of 4 0.69None
Whole fly5 ± 10 of 4

Looking for FBgn0029707. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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