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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029708 through 18771 annotations produced 1 hits



(CG3556):

Annotation Number : CG3556
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029708
Gbrowse : chrX:4424263-4427868 (+) // 99.84 //
Probeset : 1624850_at
Accessions : protein= NP_572164;, nucleotide= NM_131936;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0031419 // cobalamin binding // inferred from electronic annotation
FlyMine data for FBgn0029708.
BioGrid reports that CG3556 interacts with CG7838 .
VDRC has 2 RNAi stocks for FBgn0029708 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain673 ± 64 of 429.10Up
Head181 ± 14 of 4 7.80Up
Eye133 ± 94 of 4 5.75Up
Thoracicoabdominal ganglion1070 ± 474 of 446.20Up
Salivary gland16 ± 72 of 4 0.71None
Crop9 ± 22 of 4 0.40Down
Midgut5 ± 10 of 4 0.20Down
Tubule5 ± 00 of 4 0.20Down
Hindgut6 ± 10 of 4 0.30Down
Heart6 ± 11 of 4 0.29Down
Fat body13 ± 44 of 4 0.56Down
Ovary2 ± 10 of 4 0.10Down
Testis10 ± 04 of 4 0.40Down
Male accessory glands9 ± 10 of 4 0.40Down
Virgin spermatheca9 ± 22 of 4 0.41Down
Mated spermatheca12 ± 34 of 4 0.55Down
Adult carcass28 ± 64 of 4 1.20None
Larval CNS420 ± 294 of 418.14Up
Larval Salivary gland2 ± 00 of 4 0.12Down
Larval midgut3 ± 10 of 4 0.15Down
Larval tubule6 ± 01 of 4 0.30Down
Larval hindgut2 ± 10 of 4 0.09Down
Larval fat body2 ± 10 of 4 0.10Down
Larval trachea10 ± 44 of 4 0.45Down
Larval carcass5 ± 11 of 4 0.26Down
S2 cells (growing)3 ± 01 of 4 0.13Down
Whole fly23 ± 24 of 4

Looking for FBgn0029708. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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