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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029710 through 18771 annotations produced 1 hits



(CG3568):

Annotation Number : CG3568
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029710
Gbrowse : chrX:4436669-4438543 (+) // 100.0 //
Probeset : 1626552_at
Accessions : protein= NP_572166;, nucleotide= NM_131938;
FlyMine data for FBgn0029710.
BDGP gene expression has embryonic in situ data for CG3568: 2 pix of staining in 1 body parts.
BioGrid reports that CG3568 interacts with CG4167 .
VDRC has 2 RNAi stocks for FBgn0029710 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain104 ± 04 of 4 3.60Up
Head35 ± 24 of 4 1.20None
Eye33 ± 54 of 4 1.16None
Thoracicoabdominal ganglion109 ± 34 of 4 3.80Up
Salivary gland23 ± 22 of 4 0.80None
Crop19 ± 14 of 4 0.70Down
Midgut35 ± 34 of 4 1.20None
Tubule13 ± 02 of 4 0.50Down
Hindgut30 ± 14 of 4 1.10None
Heart68 ± 54 of 4 2.39Up
Fat body26 ± 94 of 4 0.94None
Ovary25 ± 14 of 4 0.90None
Testis87 ± 24 of 4 3.00Up
Male accessory glands35 ± 84 of 4 1.20None
Virgin spermatheca9 ± 21 of 4 0.32Down
Mated spermatheca13 ± 12 of 4 0.45Down
Adult carcass29 ± 14 of 4 1.00None
Larval CNS152 ± 64 of 4 5.34Up
Larval Salivary gland37 ± 44 of 4 1.32None
Larval midgut27 ± 33 of 4 0.97None
Larval tubule16 ± 14 of 4 0.60Down
Larval hindgut23 ± 14 of 4 0.82None
Larval fat body51 ± 24 of 4 1.80Up
Larval trachea20 ± 34 of 4 0.72Down
Larval carcass30 ± 14 of 4 1.08None
S2 cells (growing)11 ± 13 of 4 0.39Down
Whole fly28 ± 24 of 4

Looking for FBgn0029710. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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