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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029711 through 18771 annotations produced 2 hits



Usf (Usf):

Annotation Number : CG17592
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chrX:4440552-4443291 (-) // 100.0 //
Probeset : 1639393_at
Accessions : protein= NP_572167;, nucleotide= NM_131939;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
BioGrid reports that CG17592 interacts with CG3035 CG18212 CG2009 CG2530 CG31619 CG32159 CG5812 CG6685 CG7088 CG8280 CG9083 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain23 24 of 4 6.80Up
Head5 10 of 4 1.50None
Eye5 00 of 4 1.67None
Thoracicoabdominal ganglion17 14 of 4 5.10Up
Salivary gland13 40 of 4 3.96None
Crop9 20 of 4 2.70None
Midgut9 00 of 4 2.70Up
Tubule7 00 of 4 2.30Up
Hindgut8 10 of 4 2.60Up
Heart5 00 of 4 1.71None
Fat body30 253 of 4 8.83None
Ovary7 02 of 4 2.20Up
Testis0 00 of 4 0.20None
Male accessory glands11 40 of 4 3.30None
Virgin spermatheca24 10 of 4 7.09Up
Mated spermatheca28 71 of 4 8.17Up
Adult carcass3 10 of 4 0.90None
Larval CNS34 114 of 410.06Up
Larval Salivary gland25 34 of 4 7.23Up
Larval midgut5 10 of 4 1.43None
Larval tubule10 20 of 4 3.00Up
Larval hindgut10 31 of 4 3.00None
Larval fat body7 10 of 4 2.00None
Larval trachea17 44 of 4 5.14Up
Larval carcass15 10 of 4 4.54Up
S2 cells (growing)2 00 of 4 0.70None
Whole fly3 10 of 4



Usf (Usf):

Annotation Number : CG17592
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029711
Gbrowse : chrX:4440552-4443291 (-) // 100.0 //
Probeset : 1626375_a_at
Accessions : protein= NP_572167;, nucleotide= NM_131939;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
FlyMine data for FBgn0029711.
BDGP gene expression has embryonic in situ data for Usf: 13 pix of staining in 5 body parts.
BioGrid reports that CG17592 interacts with CG3035 CG18212 CG2009 CG2530 CG31619 CG32159 CG5812 CG6685 CG7088 CG8280 CG9083 .
TRiP has 1 RNAi stocks for FBgn0029711 available for purchase.
VDRC has 3 RNAi stocks for FBgn0029711 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain299 124 of 4 3.90Up
Head118 164 of 4 1.50None
Eye111 24 of 4 1.44None
Thoracicoabdominal ganglion320 194 of 4 4.10Up
Salivary gland141 124 of 4 1.82Up
Crop99 34 of 4 1.30None
Midgut40 14 of 4 0.50Down
Tubule41 14 of 4 0.50Down
Hindgut47 24 of 4 0.60None
Heart84 24 of 4 1.09None
Fat body63 114 of 4 0.82None
Ovary118 44 of 4 1.50Up
Testis84 44 of 4 1.10None
Male accessory glands55 24 of 4 0.70None
Virgin spermatheca80 44 of 4 1.04None
Mated spermatheca80 114 of 4 1.04None
Adult carcass76 54 of 4 1.00None
Larval CNS109 64 of 4 1.42None
Larval Salivary gland174 44 of 4 2.25Up
Larval midgut56 54 of 4 0.73None
Larval tubule80 44 of 4 1.00None
Larval hindgut55 24 of 4 0.72None
Larval fat body64 44 of 4 0.80None
Larval trachea88 84 of 4 1.14None
Larval carcass81 44 of 4 1.05None
S2 cells (growing)10 00 of 4 0.14Down
Whole fly77 114 of 4

Looking for FBgn0029711. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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