FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0029711 through 18771 annotations produced 2 hits

Usf (Usf):

Annotation Number : CG17592
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chrX:4440552-4443291 (-) // 100.0 //
Probeset : 1639393_at
Accessions : protein= NP_572167;, nucleotide= NM_131939;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
BioGrid reports that CG17592 interacts with CG3035 CG18212 CG2009 CG2530 CG31619 CG32159 CG5812 CG6685 CG7088 CG8280 CG9083 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	23 ± 2	4 of 4	6.80	Up
Head	5 ± 1	0 of 4	1.50	None
Eye	5 ± 0	0 of 4	1.67	None
Thoracicoabdominal ganglion	17 ± 1	4 of 4	5.10	Up
Salivary gland	13 ± 4	0 of 4	3.96	None
Crop	9 ± 2	0 of 4	2.70	None
Midgut	9 ± 0	0 of 4	2.70	Up
Tubule	7 ± 0	0 of 4	2.30	Up
Hindgut	8 ± 1	0 of 4	2.60	Up
Heart	5 ± 0	0 of 4	1.71	None
Fat body	30 ± 25	3 of 4	8.83	None
Ovary	7 ± 0	2 of 4	2.20	Up
Testis	0 ± 0	0 of 4	0.20	None
Male accessory glands	11 ± 4	0 of 4	3.30	None
Virgin spermatheca	24 ± 1	0 of 4	7.09	Up
Mated spermatheca	28 ± 7	1 of 4	8.17	Up
Adult carcass	3 ± 1	0 of 4	0.90	None
Larval CNS	34 ± 11	4 of 4	10.06	Up
Larval Salivary gland	25 ± 3	4 of 4	7.23	Up
Larval midgut	5 ± 1	0 of 4	1.43	None
Larval tubule	10 ± 2	0 of 4	3.00	Up
Larval hindgut	10 ± 3	1 of 4	3.00	None
Larval fat body	7 ± 1	0 of 4	2.00	None
Larval trachea	17 ± 4	4 of 4	5.14	Up
Larval carcass	15 ± 1	0 of 4	4.54	Up
S2 cells (growing)	2 ± 0	0 of 4	0.70	None
Whole fly	3 ± 1	0 of 4

Usf (Usf):

Annotation Number : CG17592
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029711
Gbrowse : chrX:4440552-4443291 (-) // 100.0 //
Probeset : 1626375_a_at
Accessions : protein= NP_572167;, nucleotide= NM_131939;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
FlyMine data for FBgn0029711.
BDGP gene expression has embryonic in situ data for Usf: 13 pix of staining in 5 body parts.
BioGrid reports that CG17592 interacts with CG3035 CG18212 CG2009 CG2530 CG31619 CG32159 CG5812 CG6685 CG7088 CG8280 CG9083 .
TRiP has 1 RNAi stocks for FBgn0029711 available for purchase.
VDRC has 3 RNAi stocks for FBgn0029711 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	299 ± 12	4 of 4	3.90	Up
Head	118 ± 16	4 of 4	1.50	None
Eye	111 ± 2	4 of 4	1.44	None
Thoracicoabdominal ganglion	320 ± 19	4 of 4	4.10	Up
Salivary gland	141 ± 12	4 of 4	1.82	Up
Crop	99 ± 3	4 of 4	1.30	None
Midgut	40 ± 1	4 of 4	0.50	Down
Tubule	41 ± 1	4 of 4	0.50	Down
Hindgut	47 ± 2	4 of 4	0.60	None
Heart	84 ± 2	4 of 4	1.09	None
Fat body	63 ± 11	4 of 4	0.82	None
Ovary	118 ± 4	4 of 4	1.50	Up
Testis	84 ± 4	4 of 4	1.10	None
Male accessory glands	55 ± 2	4 of 4	0.70	None
Virgin spermatheca	80 ± 4	4 of 4	1.04	None
Mated spermatheca	80 ± 11	4 of 4	1.04	None
Adult carcass	76 ± 5	4 of 4	1.00	None
Larval CNS	109 ± 6	4 of 4	1.42	None
Larval Salivary gland	174 ± 4	4 of 4	2.25	Up
Larval midgut	56 ± 5	4 of 4	0.73	None
Larval tubule	80 ± 4	4 of 4	1.00	None
Larval hindgut	55 ± 2	4 of 4	0.72	None
Larval fat body	64 ± 4	4 of 4	0.80	None
Larval trachea	88 ± 8	4 of 4	1.14	None
Larval carcass	81 ± 4	4 of 4	1.05	None
S2 cells (growing)	10 ± 0	0 of 4	0.14	Down
Whole fly	77 ± 11	4 of 4

Looking for FBgn0029711. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720