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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029712 through 18771 annotations produced 1 hits



(CG15912):

Annotation Number : CG15912
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029712
Gbrowse : chrX:4443106-4443847 (+) // 100.0 //
Probeset : 1636535_at
Accessions : protein= NP_572168;, nucleotide= NM_131940;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from phy
FlyMine data for FBgn0029712.
BioGrid reports that CG15912 interacts with CG9911 CG17666 CG8942 .
VDRC has 2 RNAi stocks for FBgn0029712 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain54 34 of 4 3.10Up
Head29 34 of 4 1.60None
Eye38 24 of 4 2.21Up
Thoracicoabdominal ganglion41 24 of 4 2.30Up
Salivary gland34 71 of 4 1.95None
Crop15 12 of 4 0.90None
Midgut13 11 of 4 0.80Down
Tubule20 24 of 4 1.20None
Hindgut20 04 of 4 1.10None
Heart23 24 of 4 1.33None
Fat body13 21 of 4 0.74Down
Ovary16 14 of 4 0.90None
Testis16 24 of 4 0.90None
Male accessory glands38 54 of 4 2.20Up
Virgin spermatheca3 00 of 4 0.18Down
Mated spermatheca4 20 of 4 0.28Down
Adult carcass16 40 of 4 0.90None
Larval CNS22 14 of 4 1.25Up
Larval Salivary gland34 04 of 4 1.96Up
Larval midgut20 22 of 4 1.18None
Larval tubule20 14 of 4 1.10None
Larval hindgut20 34 of 4 1.14None
Larval fat body13 22 of 4 0.80None
Larval trachea15 34 of 4 0.90None
Larval carcass16 24 of 4 0.92None
S2 cells (growing)16 14 of 4 0.92None
Whole fly17 04 of 4

Looking for FBgn0029712. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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