FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0029713 through 18771 annotations produced 1 hits

(CG11436):

Annotation Number : CG11436
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029713
Gbrowse : chrX:4443917-4445913 (-) // 100.0 //
Probeset : 1629013_at
Accessions : protein= NP_572169;, nucleotide= NM_131941;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0029713.
BDGP gene expression has embryonic in situ data for CG11436: 8 pix of staining in 1 body parts.
BioGrid reports that CG11436 interacts with CG14145 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	130 ± 8	4 of 4	3.00	Up
Head	35 ± 1	4 of 4	0.80	Down
Eye	18 ± 1	4 of 4	0.43	Down
Thoracicoabdominal ganglion	96 ± 5	4 of 4	2.20	Up
Salivary gland	47 ± 5	4 of 4	1.08	None
Crop	37 ± 2	4 of 4	0.80	None
Midgut	30 ± 1	3 of 4	0.70	Down
Tubule	23 ± 1	4 of 4	0.50	Down
Hindgut	32 ± 1	4 of 4	0.70	Down
Heart	16 ± 2	4 of 4	0.39	Down
Fat body	24 ± 5	4 of 4	0.55	Down
Ovary	113 ± 3	4 of 4	2.60	Up
Testis	12 ± 1	4 of 4	0.30	Down
Male accessory glands	44 ± 3	4 of 4	1.00	None
Virgin spermatheca	20 ± 1	4 of 4	0.47	Down
Mated spermatheca	25 ± 2	4 of 4	0.58	Down
Adult carcass	16 ± 3	2 of 4	0.40	Down
Larval CNS	148 ± 18	4 of 4	3.39	Up
Larval Salivary gland	77 ± 3	4 of 4	1.76	Up
Larval midgut	39 ± 2	4 of 4	0.89	None
Larval tubule	38 ± 3	4 of 4	0.90	None
Larval hindgut	47 ± 1	4 of 4	1.07	None
Larval fat body	28 ± 1	4 of 4	0.60	Down
Larval trachea	62 ± 3	4 of 4	1.43	Up
Larval carcass	44 ± 0	4 of 4	1.02	None
S2 cells (growing)	100 ± 8	4 of 4	2.28	Up
Whole fly	43 ± 2	4 of 4

Looking for FBgn0029713. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720