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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029714 through 18771 annotations produced 1 hits



(CG3527):

Annotation Number : CG3527
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029714
Gbrowse : chrX:4445999-4446931 (+) // 100.0 //
Probeset : 1629662_at
Accessions : protein= NP_572170;, nucleotide= NM_131942;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // non-traceable author statement ///
FlyMine data for FBgn0029714.
BioGrid reports that CG3527 interacts with CG7945 .
VDRC has 2 RNAi stocks for FBgn0029714 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain93 ± 24 of 4 0.60Down
Head83 ± 34 of 4 0.50Down
Eye83 ± 34 of 4 0.53Down
Thoracicoabdominal ganglion108 ± 44 of 4 0.70Down
Salivary gland68 ± 44 of 4 0.44Down
Crop84 ± 34 of 4 0.50Down
Midgut79 ± 24 of 4 0.50Down
Tubule92 ± 84 of 4 0.60Down
Hindgut85 ± 14 of 4 0.50Down
Heart66 ± 44 of 4 0.43Down
Fat body87 ± 54 of 4 0.56Down
Ovary280 ± 64 of 4 1.80Up
Testis38 ± 34 of 4 0.20Down
Male accessory glands138 ± 54 of 4 0.90None
Virgin spermatheca108 ± 74 of 4 0.70Down
Mated spermatheca142 ± 24 of 4 0.92None
Adult carcass90 ± 24 of 4 0.60Down
Larval CNS170 ± 94 of 4 1.10None
Larval Salivary gland128 ± 54 of 4 0.83None
Larval midgut69 ± 54 of 4 0.44Down
Larval tubule58 ± 24 of 4 0.40Down
Larval hindgut86 ± 84 of 4 0.55Down
Larval fat body58 ± 34 of 4 0.40Down
Larval trachea153 ± 174 of 4 0.99None
Larval carcass119 ± 164 of 4 0.76None
S2 cells (growing)144 ± 44 of 4 0.93None
Whole fly155 ± 94 of 4

Looking for FBgn0029714. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime