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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029716 through 18771 annotations produced 1 hits



(CG3546):

Annotation Number : CG3546
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029716
Gbrowse : chrX:4452104-4454035 (+) // 100.0 //
Probeset : 1633842_at
Accessions : protein= NP_572172;, nucleotide= NM_131944;
FlyMine data for FBgn0029716.
VDRC has 3 RNAi stocks for FBgn0029716 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.70None
Head4 11 of 4 1.00None
Eye1 00 of 4 0.28None
Thoracicoabdominal ganglion1 00 of 4 0.30None
Salivary gland8 40 of 4 1.99None
Crop3 10 of 4 0.70None
Midgut2 00 of 4 0.60None
Tubule3 10 of 4 0.90None
Hindgut3 10 of 4 0.90None
Heart3 00 of 4 0.72None
Fat body4 10 of 4 1.07None
Ovary0 00 of 4 0.20None
Testis0 00 of 4 0.20None
Male accessory glands3 20 of 4 0.80None
Virgin spermatheca1 00 of 4 0.41None
Mated spermatheca2 10 of 4 0.55None
Adult carcass4 10 of 4 1.00None
Larval CNS1 10 of 4 0.43None
Larval Salivary gland4 10 of 4 1.13None
Larval midgut2 10 of 4 0.54None
Larval tubule4 10 of 4 1.00None
Larval hindgut2 10 of 4 0.60None
Larval fat body1 00 of 4 0.30None
Larval trachea4 30 of 4 0.97None
Larval carcass2 00 of 4 0.51None
S2 cells (growing)1 00 of 4 0.42None
Whole fly4 10 of 4

Looking for FBgn0029716. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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