FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0029718 through 18771 annotations produced 1 hits

mitochondrial ribosomal protein L30 (mRpL30):

Annotation Number : CG7038
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029718
Gbrowse : chrX:4541909-4542682 (+) // 100.0 //
Probeset : 1640007_at
Accessions : protein= NP_525073;, nucleotide= NM_080334;
Pathway : 0005762 // mitochondrial large ribosomal subunit // inferred from sequence or structural similarity /// 0005840 // ribos
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0029718.
VDRC has 4 RNAi stocks for FBgn0029718 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	444 ± 5	4 of 4	1.00	None
Head	387 ± 16	4 of 4	0.90	Down
Eye	399 ± 14	4 of 4	0.89	Down
Thoracicoabdominal ganglion	598 ± 32	4 of 4	1.30	Up
Salivary gland	316 ± 8	4 of 4	0.70	Down
Crop	423 ± 8	4 of 4	0.90	Down
Midgut	274 ± 8	4 of 4	0.60	Down
Tubule	767 ± 21	4 of 4	1.70	Up
Hindgut	473 ± 8	4 of 4	1.10	None
Heart	383 ± 16	4 of 4	0.85	Down
Fat body	449 ± 41	4 of 4	1.00	None
Ovary	733 ± 8	4 of 4	1.60	Up
Testis	156 ± 2	4 of 4	0.30	Down
Male accessory glands	408 ± 6	4 of 4	0.90	Down
Virgin spermatheca	298 ± 20	4 of 4	0.66	Down
Mated spermatheca	327 ± 11	4 of 4	0.73	Down
Adult carcass	345 ± 27	4 of 4	0.80	Down
Larval CNS	732 ± 11	4 of 4	1.63	Up
Larval Salivary gland	568 ± 18	4 of 4	1.27	Up
Larval midgut	203 ± 12	4 of 4	0.45	Down
Larval tubule	324 ± 10	4 of 4	0.70	Down
Larval hindgut	530 ± 40	4 of 4	1.18	None
Larval fat body	305 ± 26	4 of 4	0.70	Down
Larval trachea	482 ± 40	4 of 4	1.07	None
Larval carcass	353 ± 34	4 of 4	0.79	None
S2 cells (growing)	349 ± 3	4 of 4	0.78	Down
Whole fly	449 ± 3	4 of 4

Looking for FBgn0029718. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720