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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029719 through 18771 annotations produced 1 hits



(CG15473):

Annotation Number : CG15473
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029719
Gbrowse : chrX:4546085-4548481 (-) // 100.0 //
Probeset : 1641512_at
Accessions : protein= NP_572179;, nucleotide= NM_131951;
FlyMine data for FBgn0029719.
VDRC has 3 RNAi stocks for FBgn0029719 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 ± 01 of 4 3.20Up
Head7 ± 00 of 4 1.70None
Eye5 ± 21 of 4 1.25None
Thoracicoabdominal ganglion13 ± 00 of 4 2.80Up
Salivary gland14 ± 40 of 4 3.24None
Crop6 ± 10 of 4 1.50None
Midgut4 ± 10 of 4 1.00None
Tubule7 ± 00 of 4 1.50Up
Hindgut8 ± 10 of 4 1.70None
Heart2 ± 10 of 4 0.54None
Fat body12 ± 40 of 4 2.77Up
Ovary5 ± 00 of 4 1.20None
Testis6 ± 10 of 4 1.30None
Male accessory glands10 ± 21 of 4 2.20None
Virgin spermatheca6 ± 10 of 4 1.38None
Mated spermatheca7 ± 20 of 4 1.63None
Adult carcass12 ± 51 of 4 2.80None
Larval CNS8 ± 10 of 4 1.91Up
Larval Salivary gland10 ± 12 of 4 2.34Up
Larval midgut10 ± 10 of 4 2.22Up
Larval tubule3 ± 20 of 4 0.80None
Larval hindgut10 ± 00 of 4 2.27Up
Larval fat body3 ± 20 of 4 0.80None
Larval trachea4 ± 00 of 4 1.08None
Larval carcass12 ± 10 of 4 2.62Up
S2 cells (growing)7 ± 10 of 4 1.62None
Whole fly4 ± 10 of 4

Looking for FBgn0029719. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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