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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029723 through 18771 annotations produced 1 hits



chrX:4601950-4623527 (+) // 100.0 // (proctolin receptor):

Annotation Number : CG6986
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1632899_s_at
Accessions : protein= , nucleotide= NP_001014723; /// NP_001014724; /// NP_572183; /// NP_726950;
Pathway : 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein
Interpro : 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred f
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 4.10Up
Head3 00 of 4 4.50Up
Eye3 10 of 4 4.15None
Thoracicoabdominal ganglion2 00 of 4 2.70None
Salivary gland10 40 of 412.27None
Crop2 00 of 4 2.70Up
Midgut1 00 of 4 1.30None
Tubule2 00 of 4 3.30Up
Hindgut1 00 of 4 2.30None
Heart1 00 of 4 1.94None
Fat body1 00 of 4 2.15None
Ovary1 10 of 4 1.90None
Testis0 00 of 4 0.90None
Male accessory glands5 20 of 4 6.40None
Virgin spermatheca2 10 of 4 3.24None
Mated spermatheca4 10 of 4 4.97None
Adult carcass3 10 of 4 3.80None
Larval CNS3 11 of 4 3.76None
Larval Salivary gland2 00 of 4 2.88None
Larval midgut1 00 of 4 1.39None
Larval tubule3 10 of 4 4.40None
Larval hindgut1 00 of 4 1.76None
Larval fat body3 10 of 4 4.70None
Larval trachea3 10 of 4 3.88None
Larval carcass2 00 of 4 2.85Up
S2 cells (growing)2 00 of 4 2.76Up
Whole fly0 00 of 4

Looking for FBgn0029723. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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