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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0029724 through 18771 annotations produced 1 hits


Annotation Number : CG15472
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029724
Gbrowse : chrX:4663201-4664107 (-) // 100.0 //
Probeset : 1628700_at
Accessions : protein= NP_572184;, nucleotide= NM_131956;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0029724.
BioGrid reports that CG15472 interacts with CG5376 CG9188 CG6251 CG9842 .
VDRC has 2 RNAi stocks for FBgn0029724 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.10Down
Head1 00 of 4 0.10Down
Eye4 11 of 4 0.23Down
Thoracicoabdominal ganglion2 00 of 4 0.10Down
Salivary gland12 40 of 4 0.66None
Crop3 10 of 4 0.20Down
Midgut8 20 of 4 0.40Down
Tubule4 00 of 4 0.20Down
Hindgut5 10 of 4 0.30Down
Heart3 00 of 4 0.20Down
Fat body6 21 of 4 0.35Down
Ovary2 00 of 4 0.10Down
Testis218 24 of 411.50Up
Male accessory glands7 31 of 4 0.40Down
Virgin spermatheca3 10 of 4 0.17Down
Mated spermatheca6 01 of 4 0.32Down
Adult carcass2 10 of 4 0.10Down
Larval CNS3 10 of 4 0.19Down
Larval Salivary gland6 20 of 4 0.35Down
Larval midgut9 10 of 4 0.50Down
Larval tubule5 00 of 4 0.30Down
Larval hindgut4 01 of 4 0.24Down
Larval fat body35 123 of 4 1.90None
Larval trachea5 12 of 4 0.30Down
Larval carcass3 01 of 4 0.21Down
S2 cells (growing)3 11 of 4 0.21Down
Whole fly18 04 of 4

Looking for FBgn0029724. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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