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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029725 through 18771 annotations produced 1 hits



(CG2871):

Annotation Number : CG2871
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029725
Gbrowse : chrX:4669990-4671408 (-) // 100.0 // /// chrX:4670451-4671106 (-) // 45.2 // /// chrX:4670598-4671209 (-) // 41.26 //
Probeset : 1633057_at
Accessions : protein= NP_572186;, nucleotide= NM_131958;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0029725.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye2 ± 00 of 4 0.04Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland9 ± 51 of 4 0.15Down
Crop6 ± 11 of 4 0.10Down
Midgut1 ± 00 of 4 0.00Down
Tubule5 ± 01 of 4 0.10Down
Hindgut4 ± 11 of 4 0.10Down
Heart2 ± 10 of 4 0.05Down
Fat body20 ± 173 of 4 0.31Down
Ovary2 ± 00 of 4 0.00Down
Testis898 ± 514 of 413.70Up
Male accessory glands4 ± 20 of 4 0.10Down
Virgin spermatheca16 ± 23 of 4 0.25Down
Mated spermatheca28 ± 83 of 4 0.44Down
Adult carcass4 ± 20 of 4 0.10Down
Larval CNS10 ± 24 of 4 0.16Down
Larval Salivary gland5 ± 10 of 4 0.09Down
Larval midgut2 ± 00 of 4 0.04Down
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut4 ± 00 of 4 0.07Down
Larval fat body104 ± 594 of 4 1.60None
Larval trachea4 ± 31 of 4 0.08Down
Larval carcass5 ± 10 of 4 0.09Down
S2 cells (growing)1 ± 00 of 4 0.02Down
Whole fly65 ± 24 of 4

Looking for FBgn0029725. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime