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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029727 through 18771 annotations produced 1 hits



(CG6978):

Annotation Number : CG6978
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029727
Gbrowse : chrX:4678230-4679670 (+) // 100.0 //
Probeset : 1625399_at
Accessions : protein= NP_572188;, nucleotide= NM_131960;
Interpro : 0005436 // sodium:phosphate symporter activity // inferred from sequence or structural similarity
FlyMine data for FBgn0029727.
Homophila reports that CG6978 is a close match (4e-66) to human gene DFNA25;SLC17A8;VGLUT3 (NP_647480), a gene associated with Deafness, autosomal dominant 25, 605583 (3).
VDRC has 1 RNAi stocks for FBgn0029727 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.50None
Head2 00 of 4 0.30Down
Eye3 10 of 4 0.38Down
Thoracicoabdominal ganglion2 10 of 4 0.30Down
Salivary gland6 00 of 4 0.68None
Crop5 10 of 4 0.60None
Midgut4 20 of 4 0.40None
Tubule11 00 of 4 1.20Up
Hindgut5 10 of 4 0.60None
Heart1 00 of 4 0.19Down
Fat body1 00 of 4 0.18Down
Ovary3 10 of 4 0.40Down
Testis18 14 of 4 2.10Up
Male accessory glands4 20 of 4 0.50None
Virgin spermatheca2 10 of 4 0.29Down
Mated spermatheca1 00 of 4 0.21Down
Adult carcass2 10 of 4 0.20Down
Larval CNS2 10 of 4 0.28Down
Larval Salivary gland2 10 of 4 0.30Down
Larval midgut2 00 of 4 0.23Down
Larval tubule6 00 of 4 0.70None
Larval hindgut4 10 of 4 0.48None
Larval fat body3 10 of 4 0.40None
Larval trachea6 00 of 4 0.70None
Larval carcass5 10 of 4 0.57None
S2 cells (growing)5 10 of 4 0.57None
Whole fly9 10 of 4

Looking for FBgn0029727. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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