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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0029729 through 18771 annotations produced 1 hits


(CG12682):

Annotation Number : CG12682
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029729
Gbrowse : chrX:4720036-4720750 (+) // 100.0 //
Probeset : 1629349_at
Accessions : protein= NP_572190;, nucleotide= NM_131962;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electr
FlyMine data for FBgn0029729.
BioGrid reports that CG12682 interacts with CG9373 .
VDRC has 3 RNAi stocks for FBgn0029729 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head2 ± 10 of 4 0.10Down
Eye0 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland2 ± 00 of 4 0.12Down
Crop2 ± 00 of 4 0.10Down
Midgut2 ± 00 of 4 0.10Down
Tubule2 ± 00 of 4 0.10Down
Hindgut0 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.05Down
Fat body2 ± 10 of 4 0.11Down
Ovary0 ± 00 of 4 0.00Down
Testis191 ± 104 of 410.40Up
Male accessory glands3 ± 10 of 4 0.20Down
Virgin spermatheca2 ± 10 of 4 0.12Down
Mated spermatheca0 ± 00 of 4 0.05Down
Adult carcass5 ± 10 of 4 0.30Down
Larval CNS1 ± 10 of 4 0.08Down
Larval Salivary gland2 ± 10 of 4 0.14Down
Larval midgut3 ± 00 of 4 0.21Down
Larval tubule2 ± 10 of 4 0.20Down
Larval hindgut2 ± 10 of 4 0.12Down
Larval fat body18 ± 91 of 4 1.00None
Larval trachea2 ± 30 of 4 0.12Down
Larval carcass1 ± 00 of 4 0.10Down
S2 cells (growing)3 ± 10 of 4 0.17Down
Whole fly18 ± 13 of 4

Looking for FBgn0029729. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime