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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029737 through 18771 annotations produced 1 hits



(CG6903):

Annotation Number : CG6903
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029737
Gbrowse : chrX:4812762-4815681 (+) // 100.0 //
Probeset : 1633005_at
Accessions : protein= NP_572198;, nucleotide= NM_131970;
FlyMine data for FBgn0029737.
BDGP gene expression has embryonic in situ data for CG6903: 4 pix of staining in 1 body parts.
Homophila reports that CG6903 is a close match (3e-76) to human gene HGSNAT;MPS3C;TMEM76 (NP_689632), a gene associated with Sanfilippo syndrome, type C, 252930 (3).
TRiP has 1 RNAi stocks for FBgn0029737 available for purchase.
VDRC has 2 RNAi stocks for FBgn0029737 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain211 ± 94 of 4 1.60Up
Head164 ± 134 of 4 1.20None
Eye138 ± 54 of 4 1.03None
Thoracicoabdominal ganglion167 ± 64 of 4 1.30None
Salivary gland270 ± 184 of 4 2.02Up
Crop144 ± 74 of 4 1.10None
Midgut91 ± 14 of 4 0.70Down
Tubule232 ± 214 of 4 1.70Up
Hindgut164 ± 44 of 4 1.20None
Heart233 ± 154 of 4 1.74Up
Fat body184 ± 224 of 4 1.38Up
Ovary131 ± 34 of 4 1.00None
Testis218 ± 24 of 4 1.60Up
Male accessory glands292 ± 84 of 4 2.20Up
Virgin spermatheca220 ± 94 of 4 1.65Up
Mated spermatheca237 ± 64 of 4 1.77Up
Adult carcass266 ± 184 of 4 2.00Up
Larval CNS100 ± 64 of 4 0.75None
Larval Salivary gland111 ± 134 of 4 0.83None
Larval midgut112 ± 94 of 4 0.84None
Larval tubule130 ± 64 of 4 1.00None
Larval hindgut66 ± 84 of 4 0.49Down
Larval fat body153 ± 124 of 4 1.10None
Larval trachea76 ± 194 of 4 0.57Down
Larval carcass73 ± 134 of 4 0.55Down
S2 cells (growing)269 ± 104 of 4 2.01Up
Whole fly134 ± 134 of 4

Looking for FBgn0029737. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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