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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0029740 through 18771 annotations produced 1 hits


Annotation Number : CG12680
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029740
Gbrowse : chrX:4891766-4892219 (+) // 100.0 //
Probeset : 1637549_at
Accessions : protein= NP_572201;, nucleotide= NM_131973;
FlyMine data for FBgn0029740.
BioGrid reports that CG12680 interacts with CG1856 CG2830 .
VDRC has 3 RNAi stocks for FBgn0029740 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.20Down
Head7 10 of 4 0.50Down
Eye3 00 of 4 0.23Down
Thoracicoabdominal ganglion4 00 of 4 0.20Down
Salivary gland6 30 of 4 0.39Down
Crop5 20 of 4 0.30Down
Midgut4 10 of 4 0.20Down
Tubule5 00 of 4 0.30Down
Hindgut2 10 of 4 0.20Down
Heart0 00 of 4 0.03Down
Fat body9 30 of 4 0.53Down
Ovary3 10 of 4 0.20Down
Testis139 94 of 4 8.20Up
Male accessory glands11 21 of 4 0.70None
Virgin spermatheca11 11 of 4 0.69None
Mated spermatheca17 52 of 4 1.01None
Adult carcass14 30 of 4 0.80None
Larval CNS3 20 of 4 0.22Down
Larval Salivary gland3 10 of 4 0.17Down
Larval midgut5 10 of 4 0.31Down
Larval tubule4 00 of 4 0.30Down
Larval hindgut3 10 of 4 0.21Down
Larval fat body19 61 of 4 1.20None
Larval trachea3 00 of 4 0.21Down
Larval carcass5 10 of 4 0.32Down
S2 cells (growing)1 00 of 4 0.10Down
Whole fly16 24 of 4

Looking for FBgn0029740. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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