FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0029745 through 18771 annotations produced 1 hits

(CG6789):

Annotation Number : CG6789
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029745
Gbrowse : chrX:5025930-5027022 (+) // 100.0 //
Probeset : 1627401_at
Accessions : protein= NP_572205;, nucleotide= NM_131977;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotatio
FlyMine data for FBgn0029745.
VDRC has 2 RNAi stocks for FBgn0029745 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	29 ± 1	4 of 4	1.20	Up
Head	2 ± 0	0 of 4	0.10	Down
Eye	4 ± 1	1 of 4	0.19	Down
Thoracicoabdominal ganglion	15 ± 1	4 of 4	0.60	Down
Salivary gland	5 ± 1	0 of 4	0.22	Down
Crop	2 ± 0	0 of 4	0.10	Down
Midgut	8 ± 2	0 of 4	0.30	Down
Tubule	8 ± 0	0 of 4	0.30	Down
Hindgut	11 ± 1	1 of 4	0.50	Down
Heart	0 ± 0	0 of 4	0.03	Down
Fat body	1 ± 1	0 of 4	0.05	Down
Ovary	1 ± 0	0 of 4	0.10	Down
Testis	309 ± 7	4 of 4	12.40	Up
Male accessory glands	13 ± 4	0 of 4	0.50	None
Virgin spermatheca	6 ± 2	0 of 4	0.26	Down
Mated spermatheca	11 ± 4	2 of 4	0.44	Down
Adult carcass	2 ± 1	0 of 4	0.10	Down
Larval CNS	15 ± 4	4 of 4	0.64	Down
Larval Salivary gland	21 ± 2	1 of 4	0.85	None
Larval midgut	1 ± 0	0 of 4	0.07	Down
Larval tubule	10 ± 1	1 of 4	0.40	Down
Larval hindgut	2 ± 1	0 of 4	0.08	Down
Larval fat body	22 ± 14	1 of 4	0.90	None
Larval trachea	11 ± 3	1 of 4	0.47	Down
Larval carcass	1 ± 0	0 of 4	0.05	Down
S2 cells (growing)	0 ± 0	0 of 4	0.04	Down
Whole fly	24 ± 0	4 of 4

Looking for FBgn0029745. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720