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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029753 through 18771 annotations produced 1 hits



/// (CG4198 /// DanaGF21335):

Annotation Number : CG4198
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029753
Gbrowse : chrX:5207298-5209268 (+) // 100.0 //
Probeset : 1635833_at
Accessions : protein= NP_572213;, nucleotide= NM_131985;
FlyMine data for FBgn0029753.
VDRC has 3 RNAi stocks for FBgn0029753 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head0 00 of 4 0.00Down
Eye2 10 of 4 0.04Down
Thoracicoabdominal ganglion1 10 of 4 0.00Down
Salivary gland2 10 of 4 0.05Down
Crop3 10 of 4 0.10Down
Midgut1 00 of 4 0.00Down
Tubule2 00 of 4 0.00Down
Hindgut3 10 of 4 0.10Down
Heart1 00 of 4 0.02Down
Fat body7 60 of 4 0.13Down
Ovary9 00 of 4 0.20Down
Testis845 304 of 414.90Up
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca19 21 of 4 0.35Down
Mated spermatheca15 61 of 4 0.26Down
Adult carcass1 00 of 4 0.00Down
Larval CNS2 10 of 4 0.04Down
Larval Salivary gland5 10 of 4 0.10Down
Larval midgut2 10 of 4 0.04Down
Larval tubule3 10 of 4 0.10Down
Larval hindgut2 00 of 4 0.04Down
Larval fat body57 302 of 4 1.00None
Larval trachea3 50 of 4 0.06Down
Larval carcass1 00 of 4 0.03Down
S2 cells (growing)1 00 of 4 0.03Down
Whole fly56 34 of 4

Looking for FBgn0029753. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime