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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029754 through 18771 annotations produced 1 hits



(CG15930):

Annotation Number : CG15930
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029754
Gbrowse : chrX:5209490-5211315 (-) // 100.0 //
Probeset : 1630847_at
Accessions : protein= NP_572214;, nucleotide= NM_131986;
FlyMine data for FBgn0029754.
TRiP has 1 RNAi stocks for FBgn0029754 available for purchase.
VDRC has 1 RNAi stocks for FBgn0029754 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.40None
Head8 10 of 4 0.80None
Eye3 00 of 4 0.30Down
Thoracicoabdominal ganglion7 10 of 4 0.70None
Salivary gland15 10 of 4 1.46None
Crop11 20 of 4 1.00None
Midgut12 01 of 4 1.20None
Tubule9 00 of 4 0.90Down
Hindgut13 20 of 4 1.20None
Heart4 00 of 4 0.42Down
Fat body8 20 of 4 0.75None
Ovary9 11 of 4 0.90None
Testis37 04 of 4 3.40Up
Male accessory glands9 10 of 4 0.80None
Virgin spermatheca8 10 of 4 0.73None
Mated spermatheca10 20 of 4 0.98None
Adult carcass12 30 of 4 1.10None
Larval CNS8 11 of 4 0.82None
Larval Salivary gland7 00 of 4 0.72None
Larval midgut10 10 of 4 0.96None
Larval tubule8 10 of 4 0.80None
Larval hindgut11 01 of 4 1.02None
Larval fat body20 30 of 4 1.90None
Larval trachea1 00 of 4 0.13Down
Larval carcass16 30 of 4 1.46None
S2 cells (growing)11 21 of 4 1.06None
Whole fly10 10 of 4

Looking for FBgn0029754. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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