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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029755 through 18771 annotations produced 1 hits



Sas10 (Sas10):

Annotation Number : CG4202
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029755
Gbrowse : chrX:5211461-5213105 (+) // 100.0 //
Probeset : 1629933_at
Accessions : protein= NP_572215;, nucleotide= NM_131987;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0003723 // RNA binding // inferred from electronic annotation
FlyMine data for FBgn0029755.
BDGP gene expression has embryonic in situ data for Sas10: 16 pix of staining in 9 body parts.
VDRC has 5 RNAi stocks for FBgn0029755 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain90 ± 24 of 4 0.80None
Head56 ± 54 of 4 0.50Down
Eye67 ± 34 of 4 0.58Down
Thoracicoabdominal ganglion114 ± 44 of 4 1.00None
Salivary gland86 ± 34 of 4 0.74None
Crop131 ± 74 of 4 1.10None
Midgut70 ± 44 of 4 0.60Down
Tubule66 ± 104 of 4 0.60Down
Hindgut47 ± 34 of 4 0.40Down
Heart42 ± 14 of 4 0.37Down
Fat body63 ± 64 of 4 0.54Down
Ovary301 ± 94 of 4 2.60Up
Testis12 ± 04 of 4 0.10Down
Male accessory glands107 ± 84 of 4 0.90None
Virgin spermatheca72 ± 14 of 4 0.62Down
Mated spermatheca119 ± 74 of 4 1.02None
Adult carcass53 ± 44 of 4 0.50Down
Larval CNS172 ± 184 of 4 1.47Up
Larval Salivary gland97 ± 34 of 4 0.84None
Larval midgut48 ± 34 of 4 0.41Down
Larval tubule52 ± 24 of 4 0.50Down
Larval hindgut68 ± 54 of 4 0.58Down
Larval fat body44 ± 44 of 4 0.40Down
Larval trachea114 ± 254 of 4 0.98None
Larval carcass58 ± 114 of 4 0.50Down
S2 cells (growing)65 ± 24 of 4 0.56Down
Whole fly117 ± 114 of 4

Looking for FBgn0029755. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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