FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0029761 through 18771 annotations produced 4 hits

small conductance calcium-activated potassium channel (SK):

Annotation Number : CG10706
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029761
Gbrowse : chrX:5234270-5295175 (+) // 100.0 //
Probeset : 1625065_s_at
Accessions : protein= NP_001096885; /// NP_525078; /// NP_726986; /// NP_726987; /// NP_726988; /// NP_726989; /// NP_996354;, nucleotide= NM_001103415; /// NM_080339; /// NM_167029; /// NM_167030; /// NM_167031; /// NM_167032; /// NM_206631;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred fro
FlyMine data for FBgn0029761.
BDGP gene expression has embryonic in situ data for SK: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0029761 available for purchase.
VDRC has 7 RNAi stocks for FBgn0029761 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	700 ± 23	4 of 4	20.60	Up
Head	228 ± 23	4 of 4	6.70	Up
Eye	849 ± 53	4 of 4	24.99	Up
Thoracicoabdominal ganglion	677 ± 38	4 of 4	19.90	Up
Salivary gland	41 ± 7	3 of 4	1.22	None
Crop	131 ± 8	4 of 4	3.90	Up
Midgut	11 ± 0	4 of 4	0.30	Down
Tubule	7 ± 0	1 of 4	0.20	Down
Hindgut	68 ± 4	4 of 4	2.00	Up
Heart	129 ± 18	4 of 4	3.82	Up
Fat body	14 ± 8	1 of 4	0.44	Down
Ovary	3 ± 1	1 of 4	0.10	Down
Testis	8 ± 1	4 of 4	0.20	Down
Male accessory glands	19 ± 2	2 of 4	0.60	Down
Virgin spermatheca	19 ± 1	4 of 4	0.58	None
Mated spermatheca	34 ± 7	3 of 4	1.03	None
Adult carcass	29 ± 2	4 of 4	0.90	None
Larval CNS	229 ± 21	4 of 4	6.76	Up
Larval Salivary gland	37 ± 5	4 of 4	1.11	None
Larval midgut	10 ± 1	1 of 4	0.30	Down
Larval tubule	4 ± 1	0 of 4	0.10	Down
Larval hindgut	27 ± 3	4 of 4	0.81	None
Larval fat body	2 ± 1	0 of 4	0.10	Down
Larval trachea	18 ± 17	2 of 4	0.54	None
Larval carcass	31 ± 3	4 of 4	0.94	None
S2 cells (growing)	0 ± 0	0 of 4	0.02	Down
Whole fly	34 ± 4	4 of 4

small conductance calcium-activated potassium channel (SK):

Annotation Number : CT36054
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029761
Gbrowse : chrX:5235489-5247049 (+) // 100.0 //
Probeset : 1635657_s_at
Accessions : protein= NP_001096885; /// NP_525078; /// NP_726986; /// NP_726987; /// NP_726988; /// NP_726989; /// NP_996354;, nucleotide= NM_001103415; /// NM_080339; /// NM_167029; /// NM_167030; /// NM_167031; /// NM_167032; /// NM_206631;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred fro
FlyMine data for FBgn0029761.
BDGP gene expression has embryonic in situ data for SK: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0029761 available for purchase.
VDRC has 7 RNAi stocks for FBgn0029761 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	26 ± 1	4 of 4	37.60	Up
Head	1 ± 0	0 of 4	2.30	None
Eye	17 ± 2	4 of 4	25.54	Up
Thoracicoabdominal ganglion	7 ± 1	0 of 4	11.00	Up
Salivary gland	2 ± 0	0 of 4	3.96	Up
Crop	2 ± 0	0 of 4	2.90	None
Midgut	1 ± 0	0 of 4	1.90	None
Tubule	1 ± 0	0 of 4	2.60	Up
Hindgut	1 ± 0	0 of 4	1.80	None
Heart	0 ± 0	0 of 4	0.50	None
Fat body	1 ± 0	0 of 4	2.61	Up
Ovary	1 ± 0	0 of 4	1.40	None
Testis	1 ± 0	0 of 4	1.90	None
Male accessory glands	1 ± 0	0 of 4	1.60	None
Virgin spermatheca	1 ± 0	0 of 4	2.21	None
Mated spermatheca	1 ± 0	0 of 4	1.71	None
Adult carcass	1 ± 0	0 of 4	2.30	None
Larval CNS	0 ± 0	0 of 4	1.07	None
Larval Salivary gland	2 ± 1	0 of 4	2.89	None
Larval midgut	1 ± 0	0 of 4	2.25	Up
Larval tubule	1 ± 0	0 of 4	2.00	Up
Larval hindgut	1 ± 0	0 of 4	1.96	None
Larval fat body	1 ± 0	0 of 4	2.10	None
Larval trachea	0 ± 0	0 of 4	1.14	None
Larval carcass	1 ± 0	0 of 4	1.68	None
S2 cells (growing)	0 ± 0	0 of 4	1.07	None
Whole fly	0 ± 0	0 of 4

small conductance calcium-activated potassium channel (SK):

Annotation Number : CG10706
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029761
Gbrowse : chrX:5234270-5291171 (+) // 100.0 //
Probeset : 1627752_s_at
Accessions : protein= NP_001096885; /// NP_525078; /// NP_726986; /// NP_726987; /// NP_726988; /// NP_726989; /// NP_996354;, nucleotide= NM_001103415; /// NM_080339; /// NM_167029; /// NM_167030; /// NM_167031; /// NM_167032; /// NM_206631;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred fro
FlyMine data for FBgn0029761.
BDGP gene expression has embryonic in situ data for SK: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0029761 available for purchase.
VDRC has 7 RNAi stocks for FBgn0029761 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	323 ± 9	4 of 4	54.20	Up
Head	15 ± 1	4 of 4	2.50	Up
Eye	121 ± 8	4 of 4	20.28	Up
Thoracicoabdominal ganglion	295 ± 17	4 of 4	49.50	Up
Salivary gland	28 ± 3	4 of 4	4.81	Up
Crop	46 ± 5	4 of 4	7.80	Up
Midgut	6 ± 1	2 of 4	1.00	None
Tubule	9 ± 1	2 of 4	1.50	Up
Hindgut	22 ± 1	4 of 4	3.80	Up
Heart	21 ± 1	4 of 4	3.61	Up
Fat body	21 ± 3	4 of 4	3.65	Up
Ovary	1 ± 0	0 of 4	0.30	Down
Testis	5 ± 0	1 of 4	1.00	None
Male accessory glands	5 ± 2	0 of 4	0.90	None
Virgin spermatheca	28 ± 1	4 of 4	4.78	Up
Mated spermatheca	35 ± 10	4 of 4	6.01	None
Adult carcass	12 ± 3	2 of 4	2.10	None
Larval CNS	81 ± 12	4 of 4	13.65	Up
Larval Salivary gland	24 ± 3	4 of 4	4.14	Up
Larval midgut	3 ± 1	0 of 4	0.63	None
Larval tubule	7 ± 1	2 of 4	1.30	None
Larval hindgut	7 ± 0	1 of 4	1.28	None
Larval fat body	3 ± 1	0 of 4	0.50	None
Larval trachea	6 ± 2	1 of 4	1.10	None
Larval carcass	8 ± 1	2 of 4	1.35	None
S2 cells (growing)	1 ± 0	0 of 4	0.24	Down
Whole fly	6 ± 1	1 of 4

small conductance calcium-activated potassium channel (SK):

Annotation Number : CG12732
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029761
Gbrowse : chrX:5252360-5252741 (+) // 100.0 //
Probeset : 1624040_at
Accessions : protein= NP_001096885; /// NP_525078; /// NP_726986; /// NP_726987; /// NP_726988; /// NP_726989; /// NP_996354;, nucleotide= NM_001103415; /// NM_080339; /// NM_167029; /// NM_167030; /// NM_167031; /// NM_167032; /// NM_206631;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred fro
FlyMine data for FBgn0029761.
BDGP gene expression has embryonic in situ data for SK: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0029761 available for purchase.
VDRC has 7 RNAi stocks for FBgn0029761 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	0.90	None
Head	0 ± 0	0 of 4	1.20	None
Eye	1 ± 0	0 of 4	1.79	None
Thoracicoabdominal ganglion	0 ± 0	0 of 4	1.20	None
Salivary gland	1 ± 0	0 of 4	2.10	None
Crop	1 ± 0	0 of 4	1.40	None
Midgut	1 ± 0	0 of 4	2.00	None
Tubule	0 ± 0	0 of 4	1.10	None
Hindgut	0 ± 0	0 of 4	1.30	None
Heart	1 ± 1	0 of 4	2.38	None
Fat body	0 ± 0	0 of 4	1.07	None
Ovary	0 ± 0	0 of 4	0.70	None
Testis	1 ± 0	0 of 4	2.10	None
Male accessory glands	1 ± 0	0 of 4	2.50	None
Virgin spermatheca	1 ± 0	0 of 4	1.59	None
Mated spermatheca	0 ± 0	0 of 4	0.83	None
Adult carcass	2 ± 1	0 of 4	3.80	None
Larval CNS	0 ± 0	0 of 4	0.38	None
Larval Salivary gland	0 ± 0	0 of 4	1.07	None
Larval midgut	0 ± 0	0 of 4	0.86	None
Larval tubule	1 ± 0	0 of 4	2.60	None
Larval hindgut	0 ± 0	0 of 4	1.17	None
Larval fat body	1 ± 0	0 of 4	1.40	None
Larval trachea	0 ± 0	0 of 4	0.97	None
Larval carcass	0 ± 0	0 of 4	1.07	None
S2 cells (growing)	0 ± 0	0 of 4	0.62	None
Whole fly	0 ± 0	0 of 4

Looking for FBgn0029761. 4 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720