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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029762 through 18771 annotations produced 1 hits



CG3252 (NAAT1):

Annotation Number : CG3252
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029762
Gbrowse : chrX:5299546-5304878 (-) // 100.0 //
Probeset : 1639528_at
Accessions : protein= NP_572219;, nucleotide= NM_131991;
Pathway : 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane
Interpro : 0005283 // sodium:amino acid symporter activity // inferred from mutant phenotype /// 0005326 // neurotransmitter transp
FlyMine data for FBgn0029762.
Homophila reports that CG3252 is a close match (9e-45) to human gene HND;SLC6A19 (NP_001003841), a gene associated with Hartnup disorder, 234500 (3).
VDRC has 4 RNAi stocks for FBgn0029762 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head137 ± 64 of 4 1.50Up
Eye21 ± 14 of 4 0.24Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.00Down
Salivary gland1265 ± 304 of 413.98Up
Crop307 ± 124 of 4 3.40Up
Midgut273 ± 204 of 4 3.00Up
Tubule398 ± 1414 of 4 4.40Up
Hindgut1026 ± 144 of 411.30Up
Heart3 ± 10 of 4 0.04Down
Fat body6 ± 50 of 4 0.07Down
Ovary1 ± 00 of 4 0.00Down
Testis168 ± 74 of 4 1.90Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca13 ± 22 of 4 0.14Down
Mated spermatheca20 ± 34 of 4 0.22Down
Adult carcass107 ± 44 of 4 1.20None
Larval CNS2 ± 10 of 4 0.03Down
Larval Salivary gland428 ± 434 of 4 4.73Up
Larval midgut304 ± 224 of 4 3.37Up
Larval tubule205 ± 64 of 4 2.30Up
Larval hindgut155 ± 294 of 4 1.72None
Larval fat body3 ± 10 of 4 0.00Down
Larval trachea6 ± 21 of 4 0.07Down
Larval carcass5 ± 21 of 4 0.06Down
S2 cells (growing)2 ± 00 of 4 0.03Down
Whole fly90 ± 84 of 4

Looking for FBgn0029762. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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