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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029763 through 18771 annotations produced 1 hits



(CG4165):

Annotation Number : CG4165
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029763
Gbrowse : chrX:5315562-5320941 (+) // 100.0 //
Probeset : 1640240_s_at
Accessions : protein= NP_572220; /// NP_726993; /// NP_726994; /// NP_726995;, nucleotide= NM_131992; /// NM_167035; /// NM_167036; /// NM_167037;
Interpro : 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008233 // peptidase activity //
FlyMine data for FBgn0029763.
BDGP gene expression has embryonic in situ data for CG4165: 4 pix of staining in 1 body parts.
BioGrid reports that CG4165 interacts with CG6779 CG8206 .
VDRC has 3 RNAi stocks for FBgn0029763 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain61 34 of 4 0.30Down
Head75 104 of 4 0.30Down
Eye50 04 of 4 0.23Down
Thoracicoabdominal ganglion47 64 of 4 0.20Down
Salivary gland70 34 of 4 0.32Down
Crop73 24 of 4 0.30Down
Midgut54 74 of 4 0.20Down
Tubule36 54 of 4 0.20Down
Hindgut97 34 of 4 0.40Down
Heart204 134 of 4 0.94None
Fat body496 784 of 4 2.27Up
Ovary399 64 of 4 1.80Up
Testis253 134 of 4 1.20None
Male accessory glands46 44 of 4 0.20Down
Virgin spermatheca190 174 of 4 0.87None
Mated spermatheca196 134 of 4 0.90None
Adult carcass180 264 of 4 0.80None
Larval CNS126 124 of 4 0.58Down
Larval Salivary gland117 44 of 4 0.54Down
Larval midgut100 94 of 4 0.46Down
Larval tubule53 34 of 4 0.20Down
Larval hindgut100 44 of 4 0.46Down
Larval fat body77 154 of 4 0.40Down
Larval trachea102 104 of 4 0.47Down
Larval carcass118 144 of 4 0.54Down
S2 cells (growing)126 24 of 4 0.58Down
Whole fly218 204 of 4

Looking for FBgn0029763. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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